That feature isn’t yet in the released wb_command. Try using the latest “released” version of the Pipelines from GitHub, rather than the master branch.
-- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org> on behalf of Moataz Assem <moataz.as...@mrc-cbu.cam.ac.uk> Date: Wednesday, April 4, 2018 at 1:30 PM To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> Subject: [HCP-Users] -surface-distortion -local-affine-method Hi, I am trying to run the PostFreeSurfer step using the latest Pipelines-master (downloaded today 04 April 2018 from github) but I get an error while running the script FreeSurfer2CaretConvertAndRegisterNonlinear.sh: ERROR: Unexpected parameter: -local-affine-method It seems the wb_command –surface-distortion does not have the option for “–local-affine-method” although I have the latest version of workbench (v1.2.3). The source code seems to have this option though here: https://github.com/Washington-University/workbench/commit/576dbfba0f66b7cf5c0b1b58e660c3ffe8e6b356 Do I have to update my local workbench version to incorporate the source code updates? Thanks Moataz _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
