Do you know the name and type of the file displayed as the primary overlay on 
the surface?  It should be selected in Primary Overlay on the Display Control’s 
Overlay/Underlay - Surface page.


On Apr 12, 2018, at 7:41 AM, Saad Jbabdi 
<saad.jba...@ndcn.ox.ac.uk<mailto:saad.jba...@ndcn.ox.ac.uk>> wrote:

Hi John

When I follow your steps it produces an empty func file:

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/1594/gifti.dtd";>
<GIFTI
      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
      
xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd";
      Version="1.0"
      NumberOfDataArrays="0">
   <MetaData>
      <MD>
         <Name><![CDATA[Caret-Version]]></Name>
         <Value><![CDATA[5.65]]></Value>
      </MD>
      <MD>
         <Name><![CDATA[Date]]></Name>
         <Value><![CDATA[2018-04-12T13:37:37]]></Value>
      </MD>
      <MD>
         <Name><![CDATA[comment]]></Name>
         <Value><![CDATA[]]></Value>
      </MD>
      <MD>
         <Name><![CDATA[encoding]]></Name>
         <Value><![CDATA[XML]]></Value>
      </MD>
      <MD>
         <Name><![CDATA[pubmed_id]]></Name>
         <Value><![CDATA[]]></Value>
      </MD>
   </MetaData>
   <LabelTable/>
</GIFTI>



On 11 Apr 2018, at 19:24, Harwell, John 
<jharw...@wustl.edu<mailto:jharw...@wustl.edu>> wrote:

In Caret5:
* Select File Menu -> Save Data File
* In the Save Data File Dialog, set the File Type to GIFTI Functional File 
(*.func.gii)
* Change the File Name so that it ends in “.func.gii” (may want to click the 
File Name button to choose the name with a file selection dialog)
* Verify that the Encoding is XML.
* Click the Save button.

This should create a GIFTI functional file that can be loaded into wb_view.

John H

On Apr 11, 2018, at 12:47 PM, Saad Jbabdi 
<saad.jba...@ndcn.ox.ac.uk<mailto:saad.jba...@ndcn.ox.ac.uk>> wrote:

Hi Matt

Thanks. But I am not sure I was clear enough so let me rephrase: is there a way 
to somehow export the attached map from Caret into a func.gi file that I can 
open in wb_view?

Thanks!
Saad

<caret.jpg>

On 11 Apr 2018, at 16:36, Glasser, Matthew 
<glass...@wustl.edu<mailto:glass...@wustl.edu>> wrote:

Hi Saad,

Not that I am aware of.  Probably better to generate distortion maps (e.g.
isotropic and anisotropic strains).

Matt.

On 4/11/18, 10:28 AM, 
"hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>
 on behalf of
Saad Jbabdi" 
<hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>
 on behalf of
saad.jba...@ndcn.ox.ac.uk<mailto:saad.jba...@ndcn.ox.ac.uk>> wrote:

Hi all,

Is there a way to load Caret¹s PALS-F99 deformation map onto wb_view?

Thanks
Saad



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