So it is a shape file. Follow the same instructions as before except for the
second step that has been updated to set the File Type to GIFTI Shape File.
In Caret5:
* Select File Menu -> Save Data File
* In the Save Data File Dialog, set the File Type to GIFTI Shape File
(*.shape.gii)
* Change the File Name so that it ends in “.shape.gii” (may want to click the
File Name button to choose the name with a file selection dialog)
* Verify that the Encoding is XML.
* Click the Save button.
Note that GIFTI func and shape are the same format and you can rename from
.shape.gii to .func.gii.
Alternatively, if you can find the Caret Shape File in a terminal window,
“wb_import”, included with the Workbench distribution, can be used to convert
data files from Caret format to a Workbench compatible format.
wb_import -data-file
CONVERT DATA FILE TO WORKBENCH FORMAT
wb_import -data-file
[-allow-overwrite]
[-structure structure-name]
[-area-color-file area-color-file-name]
[-border-color-file border-color-file-name]
[-foci-color-file foci-color-file-name]
<names-of-files-for-conversion>]
On Apr 12, 2018, at 10:24 AM, Saad Jbabdi
<[email protected]<mailto:[email protected]>> wrote:
This one
<Screen Shot 2018-04-12 at 16.23.15.png>
On 12 Apr 2018, at 15:21, Harwell, John
<[email protected]<mailto:[email protected]>> wrote:
Do you know the name and type of the file displayed as the primary overlay on
the surface? It should be selected in Primary Overlay on the Display Control’s
Overlay/Underlay - Surface page.
On Apr 12, 2018, at 7:41 AM, Saad Jbabdi
<[email protected]<mailto:[email protected]>> wrote:
Hi John
When I follow your steps it produces an empty func file:
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE GIFTI SYSTEM "http://www.nitrc.org/frs/download.php/1594/gifti.dtd";>
<GIFTI
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xsi:noNamespaceSchemaLocation="http://brainvis.wustl.edu/caret6/xml_schemas/GIFTI_Caret.xsd";
Version="1.0"
NumberOfDataArrays="0">
<MetaData>
<MD>
<Name><![CDATA[Caret-Version]]></Name>
<Value><![CDATA[5.65]]></Value>
</MD>
<MD>
<Name><![CDATA[Date]]></Name>
<Value><![CDATA[2018-04-12T13:37:37]]></Value>
</MD>
<MD>
<Name><![CDATA[comment]]></Name>
<Value><![CDATA[]]></Value>
</MD>
<MD>
<Name><![CDATA[encoding]]></Name>
<Value><![CDATA[XML]]></Value>
</MD>
<MD>
<Name><![CDATA[pubmed_id]]></Name>
<Value><![CDATA[]]></Value>
</MD>
</MetaData>
<LabelTable/>
</GIFTI>
On 11 Apr 2018, at 19:24, Harwell, John
<[email protected]<mailto:[email protected]>> wrote:
In Caret5:
* Select File Menu -> Save Data File
* In the Save Data File Dialog, set the File Type to GIFTI Functional File
(*.func.gii)
* Change the File Name so that it ends in “.func.gii” (may want to click the
File Name button to choose the name with a file selection dialog)
* Verify that the Encoding is XML.
* Click the Save button.
This should create a GIFTI functional file that can be loaded into wb_view.
John H
On Apr 11, 2018, at 12:47 PM, Saad Jbabdi
<[email protected]<mailto:[email protected]>> wrote:
Hi Matt
Thanks. But I am not sure I was clear enough so let me rephrase: is there a way
to somehow export the attached map from Caret into a func.gi file that I can
open in wb_view?
Thanks!
Saad
<caret.jpg>
On 11 Apr 2018, at 16:36, Glasser, Matthew
<[email protected]<mailto:[email protected]>> wrote:
Hi Saad,
Not that I am aware of. Probably better to generate distortion maps (e.g.
isotropic and anisotropic strains).
Matt.
On 4/11/18, 10:28 AM,
"[email protected]<mailto:[email protected]>
on behalf of
Saad Jbabdi"
<[email protected]<mailto:[email protected]>
on behalf of
[email protected]<mailto:[email protected]>> wrote:
Hi all,
Is there a way to load Caret¹s PALS-F99 deformation map onto wb_view?
Thanks
Saad
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