Hi All,

  Thank you for suggesting “ciftify” on non-HCP datasets. We are trying to run 
HCP pipeline using “ciftify" tool on our custom dataset and have few questions

  *   For running recon-all can we use Freesurfer v6.  Suggested version for 
HCP (Freesurfer 5.0.3_HCP) seem to have compatibility issues on Ubuntu 16.08 as 
mentioned in below thread

https://www.mail-archive.com/[email protected]/msg04158.html

  *   Do you have any scripts for transforming diffusion data that is aligned 
to subject T1 into “cifti” space similar to ciftify_subject_fmri for FMRI data

Appreciate your feedback.

Thanks
Prasanna







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