Hi, Have you checked the Release Notes documentation? We don't have a description of every single file at this point in time. (The Pipeline code is the description). If you have a question about a particular file, feel free to contact this list.
Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu On 6/19/18, 11:16 AM, "Nina de Lacy" <dela...@u.washington.edu> wrote: Hi Mike: Ah - very helpful. We may use the FIX-cleaned data for other things but right now we are doing work on methods development and would prefer not to use data cleaned with ICA. We can also of course process the unprocessed data and use that :) We are in general having trouble with deciphering the meaning of each of the filenames so if you can help with that or there is a source somewhere on the interwebs you can point us to that would be great. Basically, something that tells us what is in each filename-type in the 7T release. Ideally would include the .txt files. Thanks v much, Nina On Tue, 19 Jun 2018, Harms, Michael wrote: > > Hi, > rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll.dtseries.nii is the CIFTI version, using > MSMAll registration, on a surface mesh with ~ 1.6 mm (average) vertex spacing. > > Note that we've provided CIFTI data on both 1.6 mm and 2.0 mm meshes. > Depending on your research question, the latter may be easier to work with. > > Also, we'd suggest that you consider using the FIX-cleaned data instead, > available in the "FIX-Denoised (Compact)" packages. > > Cheers, > -MH > > -- > Michael Harms, Ph.D. > > ----------------------------------------------------------- > > Associate Professor of Psychiatry > > Washington University School of Medicine > > Department of Psychiatry, Box 8134 > > 660 South Euclid Ave. Tel: 314-747-6173 > > St. Louis, MO 63110 Email: mha...@wustl.edu > On 6/19/18, 10:01 AM, "hcp-users-boun...@humanconnectome.org on behalf of > Nina de Lacy" <hcp-users-boun...@humanconnectome.org on behalf of > dela...@u.washington.edu> wrote: > > Hi there: > > I have downloaded the 1.6mm 7T minimally preprocessed files and after looking > at a few subjects, I can't find the actual resting state timeseries > (presumably of 900 volumes). Here are the .nii files I have for an example > subject: > > rfMRI_REST1_7T_PA_Atlas_1.6mm_MSMAll.dtseries.nii > rfMRI_REST1_7T_PA_Atlas_1.6mm.dtseries.nii > rfMRI_REST1_7T_PA_dropouts.nii > rfMRI_REST1_7T_PA_Jacobian.nii > rfMRI_REST1_7T_PA_PhaseOne_gdc_dc.nii > rfMRI_REST1_7T_PA_PhaseTwo_gdc_dc.ii > rfMRI_REST1_7T_PA_SBRef.nii > rfMRI_REST1_7T_PA_sebased_bias.nii > rfMRI_REST1_7T_PA_sebased_reference.nii > > I also downloaded the unprocessed and extended release, which have the same > file structure and do contain the 900 volume timeseries. > > Could someone advise if I am missing something here? > > Thanks v much > Nina > > > This message and any attached files might contain confidential information > protected by federal and state law. The information is intended only for the > use of the individual(s) or entities originally named as addressees. The > improper disclosure of such information may be subject to civil or criminal > penalties. If this message reached you in error, please contact the sender > and destroy this message. Disclosing, copying, forwarding, or distributing > the information by unauthorized individuals or entities is strictly > prohibited by law. > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. 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