Hello, I am working on Resting State Stats following hcp_fix_multi_run and MSMAll. My call to run_RestingStateStats.sh initially failed because it was attempting to point to .fix within the resting state scan directory rather than the hcp_fix_multi_run concatenated directory. Once I changed this it seemed to run, however, I received an error within the .matlab.log
*RestingStateStats - Finished fslmaths filtering of motion confounds* *Error using ** *Inner matrix dimensions must agree.* *Error in RestingStateStats (line 232)* *MATLAB:innerdim* This told me that I should change the Movement Regressor path from the resting state scan to the hcp_fix_mult_run concatenation. Here is the full call, I just want to make sure I am providing the correct inputs: */opt/HCP-Pipelines/RestingStateStats/Compiled_RestingStateStats/distrib/run_RestingStateStats.sh /usr/local/R2013a/v81 '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/Movement_Regressors_demean' 2000 0.800000 '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/multiICAFIX_hp2000.ica/filtered_func_data.ica/melodic_mix' '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/multiICAFIX_hp2000.ica/.fix' '/opt/workbench/bin_rh_linux64/wb_command' '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/sub-7397_ses-51327_task-rest_run-01_bold_Atlas' '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/sub-7397_ses-51327_task-rest_run-01_bold_Atlas_BiasField.dscalar.nii' '/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/RestingStateStats/sub-7397_ses-51327_task-rest_run-01_bold_Atlas' '/360CortSurf_19Vol_parcel.dlabel.nii' 'REVERT' 'stats' 'NONE' 'NONE' >> /output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/RestingStateStats/ses-51327_sub-7397_ses-51327_task-rest_run-01_bold.matlab.log 2>&1* -Tim Timothy Hendrickson Neuroimaging Analyst/Staff Scientist University of Minnesota Informatics Institute University of Minnesota Bioinformatics M.S. Candidate Office: 612-624-0783 Mobile: 507-259-3434 (texts okay) _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
