Hi Ely, That is helpful to know. We have not validated MSMAll for very small amounts of fMRI data, and recommend using as much fMRI data as is available for each subject.
Matt. From: "Ely, Benjamin" <benjamin....@mssm.edu<mailto:benjamin....@mssm.edu>> Date: Thursday, December 20, 2018 at 9:44 AM To: Matt Glasser <glass...@wustl.edu<mailto:glass...@wustl.edu>> Cc: HCP User List <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] misidentification of central sulcus in FreeSurfer and MSM Hi Matt, MSMAll didn't work very well the first time we tried using 10 min (600 vol) of resting-state data only, but we re-ran it after concatenating the resting-state run with some task runs and that seems to have mostly fixed the issue. Dropbox links to screenshots below in case anyone is interested in the future. Thanks for your help! -Ely FS labeling issue in native space: https://www.dropbox.com/s/s72cs8esur5zoay/native_T1w_Axial_and_surface.png?dl=0 FS aligned myelin: https://www.dropbox.com/s/p525rx06yemp8qb/P038_MyelinMap_FS.png?dl=0 MSMSulc aligned myelin (has the biggest issue): https://www.dropbox.com/s/dmckoy03m6zexag/MNI_MSMSulc_myelin.png?dl=0 Multi-run MSMAll aligned myelin (useable): https://www.dropbox.com/s/7arva1mat53f2gd/P038_MyelinMap_MSMAll.png?dl=0 ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
