Oh good to know! Thanks Tim!
Best, -Tim On Mon, Feb 18, 2019 at 5:39 PM Timothy Coalson <tsc...@mst.edu> wrote: > Parcellated files contain only one value per parcel (per map), so it isn't > a good idea to try to reconstitute them into a spatial map before > analysis. I think the correct thing to do is to put them through PALM in a > way that doesn't use spatial information (no tfce, no smoothing, etc). > > Tim > > > On Mon, Feb 18, 2019, 4:27 PM Timothy Hendrickson <hendr...@umn.edu> > wrote: > >> Hello, >> >> I am attempting to perform an analysis with the tool PALM with >> parcellated surface data. Within the PALM wiki underneath the CIFTI >> examples portion it is suggested to separate cifti files into it's discrete >> pieces, so I tried to separate the parcellated file into the left and right >> hemisphere, however I get a failure. >> >> /home/lnpi14-raid1/timothy-data-lnpi14/DOWNLOADS/workbench/bin_rh_linux64/../exe_rh_linux64/wb_command >> -cifti-separate merged_MyelinMap_MSMSulc.Glasser.pscalar.nii ROW -metric >> CORTEX_LEFT merged_MyelinMap_MSMSulc.Glasser.L.func.gii -metric >> CORTEX_RIGHT merged_MyelinMap_MSMSulc.Glasser.R.func.gii >> >> ERROR: specified direction does not contain brain models >> >> While running: >> /home/lnpi14-raid1/timothy-data-lnpi14/DOWNLOADS/workbench/bin_rh_linux64/../exe_rh_linux64/wb_command >> -cifti-separate merged_MyelinMap_MSMSulc.Glasser.pscalar.nii COLUMN -metric >> CORTEX_LEFT merged_MyelinMap_MSMSulc.Glasser.L.func.gii -metric >> CORTEX_RIGHT merged_MyelinMap_MSMSulc.Glasser.R.func.gii >> >> ERROR: specified direction does not contain brain models >> >> Any suggestions? >> >> Thank you! >> >> -Tim >> >> >> Timothy Hendrickson >> Neuroimaging Analyst/Staff Scientist >> University of Minnesota Informatics Institute >> University of Minnesota >> Bioinformatics M.S. Candidate >> Office: 612-624-0783 >> Mobile: 507-259-3434 (texts okay) >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
