And you’ll need to be specific about any error messages. Matt.
From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of "Harms, Michael" <mha...@wustl.edu<mailto:mha...@wustl.edu>> Date: Wednesday, March 13, 2019 at 9:48 AM To: Lucy Evans <lucy.ev...@manchester.ac.uk<mailto:lucy.ev...@manchester.ac.uk>>, "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] structural preprocessing on Philips data? Hi, Sounds like a coding error. If you’ve converted your T1w and T2w scans to proper NIFTIs, then you should be able to use those as inputs. Did you review Examples/Scripts/PreFreeSurferPipelineBatch.sh ? If you get it working, let us know how the myelin maps look! Cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Associate Professor of Psychiatry Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu<mailto:mha...@wustl.edu> From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Lucy Evans <lucy.ev...@manchester.ac.uk<mailto:lucy.ev...@manchester.ac.uk>> Date: Wednesday, March 13, 2019 at 6:14 AM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] structural preprocessing on Philips data? Dear HCPers, I’m wondering if it’s possible to do the structural preprocessing pipelines on Philips 3T data? I’m trying to run the PreFreeSurfer script and it is not able to find my T1w or T2w images. These were PAR REC files that I converted to NIFTI. Could this be the issue or is it more likely that I’ve made a coding error? Thanks in advance for your help. Best wishes, Lucy Lucy Evans | PhD Student & Graduate Teaching Assistant | DNEP PGR Rep Division of Neuroscience & Experimental Psychology | School of Biological Sciences | Faculty of Biology, Medicine & Health | The University of Manchester Room 124e Zochonis Building | Brunswick Street | Manchester M13 9PL | Email: lucy.ev...@manchester.ac.uk<mailto:lucy.ev...@manchester.ac.uk> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
