> > On Wednesday 03 March 2010 16:47:20 Mark Miller wrote:
> > > Hello Thorben,
> > > However, did you in fact try using HDF5-1.8.4
> > > and reading the file with the CORE vfd (H5Pset_fapl_core)
instead of opening my file like this:
hdf5geometryFile_ = H5Fopen(filename.c_str(), H5F_ACC_RDONLY, H5P_DEFAULT);
I am now doing this:
hid_t fapl = H5Pcreate(H5P_FILE_ACCESS);
if(fapl < 0) {throw std::runtime_error("fapl < 0");}
hid_t ret = H5Pset_fapl_core(fapl, 5/*MB?*/, 0 /*no backing store*/);
if(ret < 0) {throw std::runtime_error("could not create fapl core");}
hdf5geometryFile_ = H5Fopen(filename.c_str(), H5F_ACC_RDONLY, fapl);
But using the second way, it cannot open any of my datasets:
HDF5-DIAG: Error detected in HDF5 (1.8.4) thread 0:
#000: H5D.c line 321 in H5Dopen2(): not found
major: Dataset
minor: Object not found
#001: H5Gloc.c line 468 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#002: H5Gtraverse.c line 877 in H5G_traverse(): internal path traversal
failed
major: Symbol table
minor: Object not found
#003: H5Gtraverse.c line 665 in H5G_traverse_real(): can't look up component
major: Symbol table
minor: Object not found
#004: H5Gobj.c line 1047 in H5G_obj_lookup(): can't locate object
major: Symbol table
minor: Object not found
#005: H5Gstab.c line 860 in H5G_stab_lookup(): not found
major: Symbol table
minor: Object not found
#006: H5B.c line 360 in H5B_find(): can't lookup key in leaf node
major: B-Tree node
minor: Object not found
#007: H5Gnode.c line 522 in H5G_node_found(): unable to protect symbol table
node
major: Symbol table
minor: Unable to load metadata into cache
#008: H5AC.c line 1831 in H5AC_protect(): H5C_protect() failed.
major: Object cache
minor: Unable to protect metadata
#009: H5C.c line 6160 in H5C_protect(): can't load entry
major: Object cache
minor: Unable to load metadata into cache
#010: H5C.c line 10990 in H5C_load_entry(): unable to load entry
major: Object cache
minor: Unable to load metadata into cache
#011: H5Gcache.c line 176 in H5G_node_load(): bad symbol table node
signature
major: Symbol table
minor: Unable to load metadata into cache
I'm at a loss now, what am I doing wrong here?
Cheers,
Thorben
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