Hello,
I am hoping someone here can suggest work-around.
HDF5-1.8.5 compilation is failing on pgcc-6.2 in H5Pdcpl.c
The particular code that is failing involves lines bracketed with
conditional compilation logic...
#ifdef H5_HAVE_C99_DESIGNATED_INITIALIZER
But, HDF5's configure script seems to decide that pgcc-6.2 has this
feature and there is no easy way to turn it off. I mean, I cannot
concoct a configure incantation that will turn OFF this macro symbol. I
can manually edit header files and remove the definition but that
doesn't really help.
Has anyone encountered this? Anyone have a workaround? If you do, please
'reply-all' to this email with answer. Thanks.
Mark
--
Mark C. Miller, Lawrence Livermore National Laboratory
================!!LLNL BUSINESS ONLY!!================
[email protected] urgent: [email protected]
T:8-6 (925)-423-5901 M/W/Th:7-12,2-7 (530)-753-8511
--- Begin Message ---
Mark Miller wrote:
> What platform is this? which version of pgcc?
>
> Mark
>
> On Thu, 2010-07-01 at 17:24, Laura C Murguia wrote:
>
>> make[4]: Entering directory
>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5/src'
>> /bin/sh ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I.
>> -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
>> -D_BSD_SOURCE -D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API -c99
>> -Minform=inform -fast -s -fast -Minform,inform -c -o H5Pdcpl.lo H5Pdcpl.c
>> libtool: compile: pgcc -DHAVE_CONFIG_H -I. -D_FILE_OFFSET_BITS=64
>> -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -D_POSIX_SOURCE
>> -DNDEBUG -UH5_DEBUG_API -c99 -Minform=inform -fast -s -fast
>> -Minform,inform -c H5Pdcpl.c -o H5Pdcpl.o
>> PGC-I-0222-Redundant definition for symbol __THROW
>> (/usr/include/sys/cdefs.h: 57)
>> PGC-I-0222-Redundant definition for symbol __extension__
>> (/usr/include/sys/cdefs.h: 234)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/_G_config.h: 10)
>> PGC-I-0222-Redundant definition for symbol __need_NULL
>> (/usr/include/_G_config.h: 13)
>> PGC-I-0222-Redundant definition for symbol __need_wint_t
>> (/usr/include/wchar.h: 47)
>> PGC-I-0222-Redundant definition for symbol __need_wint_t
>> (/usr/include/wchar.h: 47)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/gconv.h: 29)
>> PGC-I-0222-Redundant definition for symbol __need_wchar_t
>> (/usr/include/gconv.h: 30)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/stdlib.h: 28)
>> PGC-I-0222-Redundant definition for symbol __need_wchar_t
>> (/usr/include/stdlib.h: 30)
>> PGC-I-0222-Redundant definition for symbol __need_NULL
>> (/usr/include/stdlib.h: 31)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/local/pgi/linux86/6.2/include/alloca.h: 24)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/string.h: 31)
>> PGC-I-0222-Redundant definition for symbol __need_NULL
>> (/usr/include/string.h: 32)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/unistd.h: 193)
>> PGC-I-0222-Redundant definition for symbol __need_NULL
>> (/usr/include/unistd.h: 194)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/pwd.h: 32)
>> PGC-I-0222-Redundant definition for symbol __need_size_t
>> (/usr/include/time.h: 36)
>> PGC-I-0222-Redundant definition for symbol __need_NULL
>> (/usr/include/time.h: 37)
>> PGC-W-0114-More than one type specified (/usr/include/unistd.h: 189)
>> PGC-W-0143-Useless typedef declaration (no declarators present)
>> (/usr/include/unistd.h: 189)
>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 153)
>> PGC-S-0073-Too many initializers for H5D_def_layout_compact_g
>> (H5Pdcpl.c: 153)
>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 154)
>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 155)
>> PGC-S-0073-Too many initializers for H5D_def_layout_chunk_g (H5Pdcpl.c: 155)
>> PGC-W-0170-Designated initializers are not supported (H5Pdcpl.c: 179)
>> PGC/x86 Linux/x86 6.2-3: compilation completed with severe errors
>> make[4]: *** [H5Pdcpl.lo] Error 1
>> make[4]: Leaving directory
>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5/src'
>> make[3]: *** [install-recursive] Error 1
>> make[3]: Leaving directory
>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5'
>> make[2]: *** [hdf5-install] Error 2
>> make[2]: Leaving directory
>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports'
>> make[1]: *** [hdf5] Error 2
>> make[1]: Leaving directory
>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports'
>> make: *** [imports] Error 2
>>
>> --Laura
>>
Mark,
This is on Open b-div; heine.llnl.gov; /usr/local/pgi/linux86/6.2/bin/pgcc
--Laura
--- End Message ---
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