Hi Mark,
On Jul 1, 2010, at 8:27 PM, Mark Miller wrote:
> Hello,
>
> I am hoping someone here can suggest work-around.
>
> HDF5-1.8.5 compilation is failing on pgcc-6.2 in H5Pdcpl.c
>
> The particular code that is failing involves lines bracketed with
> conditional compilation logic...
>
> #ifdef H5_HAVE_C99_DESIGNATED_INITIALIZER
>
> But, HDF5's configure script seems to decide that pgcc-6.2 has this
> feature and there is no easy way to turn it off. I mean, I cannot
> concoct a configure incantation that will turn OFF this macro symbol. I
> can manually edit header files and remove the definition but that
> doesn't really help.
>
> Has anyone encountered this? Anyone have a workaround? If you do, please
> 'reply-all' to this email with answer. Thanks.
That a _really_ old version of pgcc (the current version is 10.6+), is
there any way to use a newer one? If not, you can edit the H5config.h and
H5pubconf.h files in 'src' subdirectory after running configure, but before
building everything with 'make'. You want to change the line:
#define HAVE_C99_DESIGNATED_INITIALIZER 1
to
/* #undef HAVE_C99_DESIGNATED_INITIALIZER */
in H5config.h and
#define H5_HAVE_C99_DESIGNATED_INITIALIZER 1
to
/* #undef H5_HAVE_C99_DESIGNATED_INITIALIZER */
in H5pubconf.h (note that the macro has a leading "H5_" in the H5pubconf.h
header file)
Quincey
> Mark
>
>
> --
> Mark C. Miller, Lawrence Livermore National Laboratory
> ================!!LLNL BUSINESS ONLY!!================
> [email protected] urgent: [email protected]
> T:8-6 (925)-423-5901 M/W/Th:7-12,2-7 (530)-753-8511
>
> From: Laura C Murguia <[email protected]>
> Date: July 1, 2010 7:35:30 PM CDT
> To: "Miller, Mark C." <[email protected]>
> Cc: "Arrighi, Bill" <[email protected]>
> Subject: Re: Hdf5-1.8.5 compilation error on pgi compiler (heine)
>
>
> Mark Miller wrote:
>> What platform is this? which version of pgcc?
>>
>> Mark
>>
>> On Thu, 2010-07-01 at 17:24, Laura C Murguia wrote:
>>
>>> make[4]: Entering directory
>>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5/src'
>>> /bin/sh ../libtool --tag=CC --mode=compile pgcc -DHAVE_CONFIG_H -I.
>>> -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
>>> -D_BSD_SOURCE -D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API -c99
>>> -Minform=inform -fast -s -fast -Minform,inform -c -o H5Pdcpl.lo H5Pdcpl.c
>>> libtool: compile: pgcc -DHAVE_CONFIG_H -I. -D_FILE_OFFSET_BITS=64
>>> -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE -D_POSIX_SOURCE
>>> -DNDEBUG -UH5_DEBUG_API -c99 -Minform=inform -fast -s -fast
>>> -Minform,inform -c H5Pdcpl.c -o H5Pdcpl.o
>>> PGC-I-0222-Redundant definition for symbol __THROW
>>> (/usr/include/sys/cdefs.h: 57)
>>> PGC-I-0222-Redundant definition for symbol __extension__
>>> (/usr/include/sys/cdefs.h: 234)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/_G_config.h: 10)
>>> PGC-I-0222-Redundant definition for symbol __need_NULL
>>> (/usr/include/_G_config.h: 13)
>>> PGC-I-0222-Redundant definition for symbol __need_wint_t
>>> (/usr/include/wchar.h: 47)
>>> PGC-I-0222-Redundant definition for symbol __need_wint_t
>>> (/usr/include/wchar.h: 47)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/gconv.h: 29)
>>> PGC-I-0222-Redundant definition for symbol __need_wchar_t
>>> (/usr/include/gconv.h: 30)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/stdlib.h: 28)
>>> PGC-I-0222-Redundant definition for symbol __need_wchar_t
>>> (/usr/include/stdlib.h: 30)
>>> PGC-I-0222-Redundant definition for symbol __need_NULL
>>> (/usr/include/stdlib.h: 31)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/local/pgi/linux86/6.2/include/alloca.h: 24)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/string.h: 31)
>>> PGC-I-0222-Redundant definition for symbol __need_NULL
>>> (/usr/include/string.h: 32)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/unistd.h: 193)
>>> PGC-I-0222-Redundant definition for symbol __need_NULL
>>> (/usr/include/unistd.h: 194)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/pwd.h: 32)
>>> PGC-I-0222-Redundant definition for symbol __need_size_t
>>> (/usr/include/time.h: 36)
>>> PGC-I-0222-Redundant definition for symbol __need_NULL
>>> (/usr/include/time.h: 37)
>>> PGC-W-0114-More than one type specified (/usr/include/unistd.h: 189)
>>> PGC-W-0143-Useless typedef declaration (no declarators present)
>>> (/usr/include/unistd.h: 189)
>>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 153)
>>> PGC-S-0073-Too many initializers for H5D_def_layout_compact_g
>>> (H5Pdcpl.c: 153)
>>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 154)
>>> PGC-S-0170-Designated initializers are not supported (H5Pdcpl.c: 155)
>>> PGC-S-0073-Too many initializers for H5D_def_layout_chunk_g (H5Pdcpl.c: 155)
>>> PGC-W-0170-Designated initializers are not supported (H5Pdcpl.c: 179)
>>> PGC/x86 Linux/x86 6.2-3: compilation completed with severe errors
>>> make[4]: *** [H5Pdcpl.lo] Error 1
>>> make[4]: Leaving directory
>>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5/src'
>>> make[3]: *** [install-recursive] Error 1
>>> make[3]: Leaving directory
>>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports/hdf5'
>>> make[2]: *** [hdf5-install] Error 2
>>> make[2]: Leaving directory
>>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports'
>>> make[1]: *** [hdf5] Error 2
>>> make[1]: Leaving directory
>>> `/misc/lc/shale/perforce/Release_4_12_new_hdf5_1.8.5/imports'
>>> make: *** [imports] Error 2
>>>
>>> --Laura
>>>
> Mark,
> This is on Open b-div; heine.llnl.gov; /usr/local/pgi/linux86/6.2/bin/pgcc
>
> --Laura
>
>
> _______________________________________________
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