Oh, yes, sorry... Those are from the HL Fortran APIs. You will need to use --disable-hl configure flag to disable them.
If you are using fortran HL APIs, you are out of luck for now. Elena On Jan 31, 2011, at 4:23 PM, Daniel Dombroski wrote: > Thanks Elena, > > My code is on a DoD Cray XE6. I contacted their tech support to see if I > could have them recompile, and they tried but ran into problems. I'm pasting > their description of the issues below. > > ########### > > Here was the initial problem description: > > Daniel, > I've run into a compilation problem. > > make[3]: Entering directory > `/work/local/usp/hdf5/1.8.5p1-i8r8/src/hdf5-1.8.5-patch1/hl/fortran/test' > pgf90 -fast -s -Mnoframe -I../../../fortran/src -I../../../hl/fortran/src > -I../../../fortran/src -I../../../hl/fortran/src -i8 -r8 -c -o tstlite.o > tstlite.f90 > PGF90-S-0155-Ambiguous interfaces for generic procedure h5ltmake_dataset_f > (tstlite.f90: 114) > PGF90-S-0155-Ambiguous interfaces for generic procedure h5ltread_dataset_f > (tstlite.f90: 328) > 0 inform, 0 warnings, 4 severes, 0 fatal for test_dataset2d > > I do not know whether I will be able to determine the cause of the problem, > in any case, it will take some time to understand. > > Regards, > Alan Scheinine, HPC Service Helpdesk, ERDC, Vicksburg > > > ############# > > > Here was a follow-up email from them: > > Daniel, > I cannot find any description of compiling HDF5 using "-i8 -r8" on the > HDF5 web site. In the distribution there is brief mention of now being able > to deal with "-i8 -r8" but the code does not look like it can deal with that. > There are generic functions such as > > interface h5ltmake_dataset_f > module procedure h5ltmake_dataset_f_int1 > module procedure h5ltmake_dataset_f_int2 > module procedure h5ltmake_dataset_f_int3 > module procedure h5ltmake_dataset_f_float1 > module procedure h5ltmake_dataset_f_float2 > module procedure h5ltmake_dataset_f_float3 > module procedure h5ltmake_dataset_f_double1 > module procedure h5ltmake_dataset_f_double2 > module procedure h5ltmake_dataset_f_double3 > end interface > > but with -r8 h5ltmake_dataset_f_float1 and h5ltmake_dataset_f_double1 are > the same. > > The release_doc/HISTORY-1_8.txt says that for the F90 API > Bug Fixes since HDF5-1.8.1 > - Put the DOUBLE PRECISION interfaces in a separate module and > added a USE statement for the module. The interfaces are > included/excluded depending on the state of FORTRAN_DEFAULT_REAL > is DBLE_F which detects if the default REAL is DOUBLE PRECISION. > This allows the library to be compiled with -r8 Fortran flag > without the user needing to edit the source code. > (MSB - 200/8/27) > The date above should be 2008/ rather than 200/ . > > However, the h5ltmake_dataset_f module shown above is taken directly from the > code. It would appear that the bug fix by "MSB" neglected H5LT. In the > entire history file for version 1.8 "-i8" is mentioned only once and "-r8" is > mentioned only once. I'm inclined to believe that module h5lt is not > compatible with -r8. > > Regards, > Alan Scheinine, HPC Service Helpdesk, ERDC, Vicksburg, MS > > > > > > > On Jan 31, 2011, at 8:11 AM, Elena Pourmal wrote: > >> Daniel, >> >> You will need to recompile HDF5 library using those flags, e.g., >> >> export FC="gfortran -i8" >> ./configure --enable-fortran .... >> make >> >> When we release the version that supports Fortran2003, recompilation would >> not be needed. Please let me know if you are interested to try our >> pre-released version. >> >> Thank you! >> >> Elena >> >> >> On Jan 30, 2011, at 11:56 PM, Daniel Dombroski wrote: >> >>> Hi All, >>> >>> I have a fortran code which I would like to compile with the 64 bit real >>> and integer (-r8 and -i8) flags. However, I run into the problem of kind >>> mismatches with the calls to hdf5 routines which do not like double >>> precision. Is there a way to get hdf5 to handle the higher precision >>> values? >>> >>> Thanks, >>> >>> -Dan >>> _______________________________________________ >>> Hdf-forum is for HDF software users discussion. >>> [email protected] >>> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org >> >> >> _______________________________________________ >> Hdf-forum is for HDF software users discussion. >> [email protected] >> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org > > > _______________________________________________ > Hdf-forum is for HDF software users discussion. > [email protected] > http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
