Dear Dana the linux is 64bit. File system is ext3. There is lot of free
space on system. There is no disk quota , further output is as follows
*
*
*[pmdtest@pmd03 ~]$ mount -l*
/dev/mapper/KusuVolGroup00-ROOT on / type ext3 (rw)
proc on /proc type proc (rw)
sysfs on /sys type sysfs (rw)
devpts on /dev/pts type devpts (rw,gid=5,mode=620)
/dev/mapper/KusuVolGroup00-HOME on /home type ext3 (rw)
/dev/mapper/KusuVolGroup00-DEPOT on /depot type ext3 (rw)
/dev/mapper/KusuVolGroup00-VAR on /var type ext3 (rw)
/dev/sda1 on /boot type ext3 (rw) [/boot]
tmpfs on /dev/shm type tmpfs (rw)
none on /proc/sys/fs/binfmt_misc type binfmt_misc (rw)
sunrpc on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw)
nfsd on /proc/fs/nfsd type nfsd (rw)
*[pmdtest@pmd03 ~]$ df -H*
Filesystem Size Used Avail Use% Mounted on
/dev/mapper/KusuVolGroup00-ROOT
13G 6.6G 5.3G 56% /
/dev/mapper/KusuVolGroup00-HOME
117G 61G 51G 55% /home
/dev/mapper/KusuVolGroup00-DEPOT
11G 4.6G 5.3G 47% /depot
/dev/mapper/KusuVolGroup00-VAR
2.1G 533M 1.5G 27% /var
/dev/sda1 106M 19M 82M 19% /boot
tmpfs 4.2G 0 4.2G 0% /dev/shm
[pmdtest@pmd03 ~]$
*test/big*
Testing large dataset write
*FAILED*
HDF5-DIAG: Error detected in HDF5 (1.8.6) thread 0:
#000: H5Dio.c line 266 in H5Dwrite(): can't write data
major: Dataset
minor: Write failed
#001: H5Dio.c line 671 in H5D_write(): can't write data
major: Dataset
minor: Write failed
#002: H5Dcontig.c line 557 in H5D_contig_write(): contiguous write failed
major: Dataset
minor: Write failed
#003: H5Dselect.c line 306 in H5D_select_write(): write error
major: Dataspace
minor: Write failed
#004: H5Dselect.c line 217 in H5D_select_io(): write error
major: Dataspace
minor: Write failed
#005: H5Dcontig.c line 977 in H5D_contig_writevv(): block read failed
major: Low-level I/O
minor: Read failed
#006: H5Fio.c line 113 in H5F_block_read(): read through metadata
accumulator failed
major: Low-level I/O
minor: Read failed
#007: H5Faccum.c line 254 in H5F_accum_read(): driver read request failed
major: Low-level I/O
minor: Read failed
#008: H5FDint.c line 142 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#009: H5FDsec2.c line 745 in H5FD_sec2_read(): unable to seek to proper
position, errno = 22, error message = 'Invalid argument'
major: Low-level I/O
minor: Seek failed
*** TEST FAILED ***
Segmentation fault
Regards
Ahsan
On Tue, Dec 11, 2012 at 7:24 PM, Dana Robinson <[email protected]>wrote:
> Hi Ahsan,
>
>
>> I am trying to install hdf-1.8.6 on RHEL5.3, I configured with the
>> following command
>>
>> ./configure --with-zlib=/usr/local/ --prefix=/usr/local/
>>
>
> Is your system 32 or 64-bit? What file system are you using? How much
> free space do you have on the drive? Do you have any disk quotas? The
> output of mount -l, df -H, and quota would be helpful.
>
> Is the error repeatable? You don't need to re-run make check - just run
> test/big directly.
>
>
>
>> make check install fails with the following error
>>
>>
>>
>> Test passed with the Family Driver.
>>
>> Checking if file system supports big files...
>> Testing big file with the SEC2 Driver
>> Testing large dataset write
>> *FAILED*
>> Command terminated by signal 11
>> 0.02user 0.03system 0:00.06elapsed 100%CPU (0avgtext+0avgdata
>> 0maxresident)k
>> 0inputs+0outputs (0major+7343minor)pagefaults 0swaps
>> make[4]: *** [big.chkexe_] Error 1
>> make[4]: Leaving directory `/home/pmdtest/hdf5-1.8.6/test'
>> make[3]: *** [build-check-s] Error 2
>> make[3]: Leaving directory `/home/pmdtest/hdf5-1.8.6/test'
>> make[2]: *** [test] Error 2
>> make[2]: Leaving directory `/home/pmdtest/hdf5-1.8.6/test'
>> make[1]: *** [check-am] Error 2
>> make[1]: Leaving directory `/home/pmdtest/hdf5-1.8.6/test'
>> make: *** [check-recursive] Error 1
>> [root@pmd03 hdf5-1.8.6]#
>>
>>
> If it passes on the family driver and fails on SEC2, then the first thing
> I'd check is that you don't have quota or disk space issues.
>
> Cheers,
>
> Dana
>
> _______________________________________________
> Hdf-forum is for HDF software users discussion.
> [email protected]
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
>
_______________________________________________
Hdf-forum is for HDF software users discussion.
[email protected]
http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
