I have the following script that I am writing which in the end is going to generate one of our DREAM3D style hdf5 files. I have a self compiled hdf5 1.8.10-patch 1 on an OS X 10.6.8 system. here is the script
#!/bin/bash # This script will attempt to convert ascii text files into a .dream3d file # We assume that the h5import program is in the current path # First we need the dimensions, resolution and origin of the voxel data HDF5_INSTALL="/Users/Shared/Toolkits/hdf5-1.8.10" PATH=$PATH:$HDF5_INSTALL/bin dimsFile="/tmp/dims.txt" echo "25 50 10" > $dimsFile dimsConfig="/tmp/dims.config" echo "PATH VoxelDataContainer DIMENSIONS" > $dimsConfig echo "INPUT-CLASS TEXTIN" >> $dimsConfig echo "RANK 1" >> $dimsConfig echo "DIMENSION-SIZES 3" >> $dimsConfig echo "OUTPUT-CLASS IN" >> $dimsConfig echo "OUTPUT-SIZE 64" >> $dimsConfig echo "OUTPUT-ARCHITECTURE IEEE" >> $dimsConfig echo "OUTPUT-BYTE-ORDER LE" >> $dimsConfig resFile="/tmp/res.txt" echo "1.0 0.75 0.25" > $resFile resConfig="/tmp/res.config" echo "PATH VoxelDataContainer SPACING" > $resConfig echo "INPUT-CLASS TEXTFP" >> $resConfig echo "RANK 1" >> $resConfig echo "DIMENSION-SIZES 3" >> $resConfig echo "OUTPUT-CLASS FP" >> $resConfig echo "OUTPUT-SIZE 32" >> $resConfig echo "OUTPUT-ARCHITECTURE IEEE" >> $resConfig echo "OUTPUT-BYTE-ORDER LE" >> $resConfig orgFile="/tmp/origin.txt" echo "0 0 0" > $orgFile orgConfig="/tmp/origin.config" echo "PATH VoxelDataContainer ORIGIN" > $orgConfig echo "INPUT-CLASS TEXTFP" >> $orgConfig echo "RANK 1" >> $orgConfig echo "DIMENSION-SIZES 3" >> $orgConfig echo "OUTPUT-CLASS FP" >> $orgConfig echo "OUTPUT-SIZE 32" >> $orgConfig echo "OUTPUT-ARCHITECTURE IEEE" >> $orgConfig echo "OUTPUT-BYTE-ORDER LE" >> $orgConfig h5import $dimsFile -config $dimsConfig $resFile -config $resConfig $orgFile -config $orgConfig -outfile /tmp/out.dream3d When I run the script I get the following error: [mjackson@Ferb:Desktop]$ ./AsciiToDream3D.sh Unknown keyword in configuration file: /tmp/dims.config Error in processing the configuration file: /tmp/dims.config. Program aborted. I followed one of the examples given in the help for h5import. Any idea what h5import is complaining about? Also as a usage note, it would be nice if the error message actually output which keyword h5import had an issue with. Would help the debugging a lot. Thanks ___________________________________________________________ Mike Jackson Principal Software Engineer BlueQuartz Software Dayton, Ohio [email protected] www.bluequartz.net _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
