Yes that is the basic idea, check the h5import help and the tools reference
manual web page for the details. I think you may need another switch to get
enough info in the header.
Allen
On Thursday, February 28, 2013 03:28:57 PM Michael Jackson wrote:
> I guess. Just the header part then?
>
> HDF5 "/Users/Shared/Data/SyntheticStructures/2Phase/2PhaseTexture.dream3d" {
> DATASET "/VoxelDataContainer/DIMENSIONS" {
> DATATYPE H5T_STD_I64LE
> DATASPACE SIMPLE { ( 3 ) / ( 3 ) }
> }
> }
>
> That would work?
>
> --
> Mike Jackson <www.bluequartz.net>
>
> On Feb 28, 2013, at 3:05 PM, Allen D Byrne wrote:
> > 1.8.10 h5import can now use h5dump output files, would that work?
> >
> > Allen
> >
> > On Thursday, February 28, 2013 11:38:02 AM Michael Jackson wrote:
> >> I have the following script that I am writing which in the end is going
> >> to
> >> generate one of our DREAM3D style hdf5 files. I have a self compiled hdf5
> >> 1.8.10-patch 1 on an OS X 10.6.8 system. here is the script
> >>
> >> #!/bin/bash
> >> # This script will attempt to convert ascii text files into a .dream3d
> >> file
> >> # We assume that the h5import program is in the current path
> >>
> >> # First we need the dimensions, resolution and origin of the voxel data
> >> HDF5_INSTALL="/Users/Shared/Toolkits/hdf5-1.8.10"
> >> PATH=$PATH:$HDF5_INSTALL/bin
> >>
> >> dimsFile="/tmp/dims.txt"
> >> echo "25 50 10" > $dimsFile
> >> dimsConfig="/tmp/dims.config"
> >> echo "PATH VoxelDataContainer DIMENSIONS" > $dimsConfig
> >> echo "INPUT-CLASS TEXTIN" >> $dimsConfig
> >> echo "RANK 1" >> $dimsConfig
> >> echo "DIMENSION-SIZES 3" >> $dimsConfig
> >> echo "OUTPUT-CLASS IN" >> $dimsConfig
> >> echo "OUTPUT-SIZE 64" >> $dimsConfig
> >> echo "OUTPUT-ARCHITECTURE IEEE" >> $dimsConfig
> >> echo "OUTPUT-BYTE-ORDER LE" >> $dimsConfig
> >>
> >> resFile="/tmp/res.txt"
> >> echo "1.0 0.75 0.25" > $resFile
> >> resConfig="/tmp/res.config"
> >> echo "PATH VoxelDataContainer SPACING" > $resConfig
> >> echo "INPUT-CLASS TEXTFP" >> $resConfig
> >> echo "RANK 1" >> $resConfig
> >> echo "DIMENSION-SIZES 3" >> $resConfig
> >> echo "OUTPUT-CLASS FP" >> $resConfig
> >> echo "OUTPUT-SIZE 32" >> $resConfig
> >> echo "OUTPUT-ARCHITECTURE IEEE" >> $resConfig
> >> echo "OUTPUT-BYTE-ORDER LE" >> $resConfig
> >>
> >> orgFile="/tmp/origin.txt"
> >> echo "0 0 0" > $orgFile
> >> orgConfig="/tmp/origin.config"
> >> echo "PATH VoxelDataContainer ORIGIN" > $orgConfig
> >> echo "INPUT-CLASS TEXTFP" >> $orgConfig
> >> echo "RANK 1" >> $orgConfig
> >> echo "DIMENSION-SIZES 3" >> $orgConfig
> >> echo "OUTPUT-CLASS FP" >> $orgConfig
> >> echo "OUTPUT-SIZE 32" >> $orgConfig
> >> echo "OUTPUT-ARCHITECTURE IEEE" >> $orgConfig
> >> echo "OUTPUT-BYTE-ORDER LE" >> $orgConfig
> >>
> >> h5import $dimsFile -config $dimsConfig $resFile -config $resConfig
> >> $orgFile -config $orgConfig -outfile /tmp/out.dream3d
> >>
> >> When I run the script I get the following error:
> >> [mjackson@Ferb:Desktop]$ ./AsciiToDream3D.sh
> >> Unknown keyword in configuration file: /tmp/dims.config
> >> Error in processing the configuration file: /tmp/dims.config.
> >> Program aborted.
> >>
> >> I followed one of the examples given in the help for h5import. Any idea
> >> what h5import is complaining about? Also as a usage note, it would be
> >> nice if the error message actually output which keyword h5import had an
> >> issue with. Would help the debugging a lot.
> >>
> >> Thanks
> >> ___________________________________________________________
> >> Mike Jackson Principal Software Engineer
> >> BlueQuartz Software Dayton, Ohio
> >> [email protected] www.bluequartz.net
> >>
> >>
> >> _______________________________________________
> >> Hdf-forum is for HDF software users discussion.
> >> [email protected]
> >> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
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