Hello,
When using h5diff, my users are seeing crash and core dumps.
Any ideas?
h5diff -cp 1.e-2 SingleSiteBethe.output.h5 SingleSiteBethe.reference.h5
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5A.c line 1092 in H5Aread(): unable to read attribute
major: Attribute
minor: Read failed
#001: H5A.c line 1152 in H5A_read(): unable to convert between src and
dst datatypes
major: Attribute
minor: Feature is unsupported
#002: H5T.c line 4525 in H5T_path_find(): no appropriate function for
conversion path
major: Datatype
minor: Unable to initialize object
Not comparable: </G/__BlockIndicesList> has sign H5T_SGN_NONE and
</G/__BlockIndicesList> has sign H5T_SGN_ERROR
Not comparable: </G/__Name> has sign H5T_SGN_NONE and </G/__Name> has
sign H5T_SGN_ERROR
Not comparable: </G/__Note> has sign H5T_SGN_NONE and </G/__Note> has
sign H5T_SGN_ERROR
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5A.c line 1092 in H5Aread(): unable to read attribute
major: Attribute
minor: Read failed
#001: H5A.c line 1152 in H5A_read(): unable to convert between src and
dst datatypes
major: Attribute
minor: Feature is unsupported
#002: H5T.c line 4525 in H5T_path_find(): no appropriate function for
conversion path
major: Datatype
minor: Unable to initialize object
Not comparable: </G/down/IndicesL> has sign H5T_SGN_NONE and
</G/down/IndicesL> has sign H5T_SGN_ERROR
Not comparable: </G/down/IndicesR> has sign H5T_SGN_NONE and
</G/down/IndicesR> has sign H5T_SGN_ERROR
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5A.c line 1092 in H5Aread(): unable to read attribute
major: Attribute
minor: Read failed
#001: H5A.c line 1152 in H5A_read(): unable to convert between src and
dst datatypes
major: Attribute
minor: Feature is unsupported
#002: H5T.c line 4525 in H5T_path_find(): no appropriate function for
conversion path
major: Datatype
minor: Unable to initialize object
*** glibc detected *** h5diff: free(): invalid pointer:
0x000000335eb8eed8 ***
======= Backtrace: =========
/lib64/libc.so.6[0x335e8760e6]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5MM_xfree+0xb)[0x2b76c5db401b]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(+0x29b097)[0x2b76c5ee6097]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5T_vlen_reclaim+0x44)[0x2b76c5ee5c34]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5S_select_iterate+0x28a)[0x2b76c5e3640a]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5D_vlen_reclaim+0x59)[0x2b76c5cf8c19]
/apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5Dvlen_reclaim+0x123)[0x2b76c5cdcaf3]
h5diff[0x41d68a]
h5diff[0x41c79c]
h5diff[0x41badf]
h5diff[0x41a535]
h5diff[0x40606f]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x335e81ecdd]
h5diff[0x405ed9]
Thanks,
Jason
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