Hello Jason, There is a bug report in our system for a similar error with h5diff with a dataset containing an attribute that is an object reference. Is the 'problem' attribute an object reference?
Would you be able to give us your file to look at? Below are instructions for placing a file on our local ftp server, if you can. Thanks! -Barbara [email protected] --- PLACING FILE ON THE HDF GROUP FTP SERVER: >From a command line, you can access The HDF Group (local) ftp server by typing: ftp ftp.hdfgroup.uiuc.edu Login as "anonymous" Go to the pub/incoming/help/ directory: cd pub/incoming/help Type 'pwd' to see if you are in that location. (You will not be able to see the contents of the directory.): pwd Type 'bin' to put in binary mode: bin Place file in directory after you are in binary mode: put xxx Get out of ftp: quit Please let me know if you have placed the file there. -----Original Message----- From: Hdf-forum [mailto:[email protected]] On Behalf Of Jason Temple Sent: Thursday, December 05, 2013 7:02 AM To: [email protected] Subject: [Hdf-forum] h5diff crash and core dump Hello, When using h5diff, my users are seeing crash and core dumps. Any ideas? h5diff -cp 1.e-2 SingleSiteBethe.output.h5 SingleSiteBethe.reference.h5 HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5A.c line 1092 in H5Aread(): unable to read attribute major: Attribute minor: Read failed #001: H5A.c line 1152 in H5A_read(): unable to convert between src and dst datatypes major: Attribute minor: Feature is unsupported #002: H5T.c line 4525 in H5T_path_find(): no appropriate function for conversion path major: Datatype minor: Unable to initialize object Not comparable: </G/__BlockIndicesList> has sign H5T_SGN_NONE and </G/__BlockIndicesList> has sign H5T_SGN_ERROR Not comparable: </G/__Name> has sign H5T_SGN_NONE and </G/__Name> has sign H5T_SGN_ERROR Not comparable: </G/__Note> has sign H5T_SGN_NONE and </G/__Note> has sign H5T_SGN_ERROR HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5A.c line 1092 in H5Aread(): unable to read attribute major: Attribute minor: Read failed #001: H5A.c line 1152 in H5A_read(): unable to convert between src and dst datatypes major: Attribute minor: Feature is unsupported #002: H5T.c line 4525 in H5T_path_find(): no appropriate function for conversion path major: Datatype minor: Unable to initialize object Not comparable: </G/down/IndicesL> has sign H5T_SGN_NONE and </G/down/IndicesL> has sign H5T_SGN_ERROR Not comparable: </G/down/IndicesR> has sign H5T_SGN_NONE and </G/down/IndicesR> has sign H5T_SGN_ERROR HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0: #000: H5A.c line 1092 in H5Aread(): unable to read attribute major: Attribute minor: Read failed #001: H5A.c line 1152 in H5A_read(): unable to convert between src and dst datatypes major: Attribute minor: Feature is unsupported #002: H5T.c line 4525 in H5T_path_find(): no appropriate function for conversion path major: Datatype minor: Unable to initialize object *** glibc detected *** h5diff: free(): invalid pointer: 0x000000335eb8eed8 *** ======= Backtrace: ========= /lib64/libc.so.6[0x335e8760e6] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5MM_xfree+0xb)[0x2b76c5db401b] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(+0x29b097)[0x2b76c5ee6097] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5T_vlen_reclaim+0x44)[0x2b76c5ee5c34] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5S_select_iterate+0x28a)[0x2b76c5e3640a] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5D_vlen_reclaim+0x59)[0x2b76c5cf8c19] /apps/monch/hdf5/1.8.11-parallel/intel/14.0.1-impi/lib/libhdf5.so.8(H5Dvlen_reclaim+0x123)[0x2b76c5cdcaf3] h5diff[0x41d68a] h5diff[0x41c79c] h5diff[0x41badf] h5diff[0x41a535] h5diff[0x40606f] /lib64/libc.so.6(__libc_start_main+0xfd)[0x335e81ecdd] h5diff[0x405ed9] Thanks, Jason _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org _______________________________________________ Hdf-forum is for HDF software users discussion. [email protected] http://mail.lists.hdfgroup.org/mailman/listinfo/hdf-forum_lists.hdfgroup.org
