I am pretty sure I have seen command line options for server file location and log location, but I am more uncertain about the liblist file location...
You cannot set the liblist.gam file dynamically per server instance. The server will always use the same. To run servers with different liblist.gam files you need seperate installations.
You can, though, choose to run your server with Metamod as the only plugin. Metamod allows you to set different plugins.ini and metaexec.ini files for different server instances. You can set them on the commandline. See the Metamod webpage for details.
Florian.
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