I apologize for the delay in getting images for you guys to work with.
I have resized the images to 1000 pixels on the long side and uploaded all 3 
sets here

http://kvtours.com/test-photos/photo-resize/


Windows Copy. This one I open the memory card with windows file explorer and 
copy it from a folder on the card to a folder on my computer.

Windows import. When the card is put in the computer I click on import instead 
of opening with file explorer and copying.

Mac. Images imported into a mac with iphoto.
(the zipped versions are the same as what is in the respective subfolders, just 
easier to download)


http://kvtours.com/test-photos/image-comparision/

In there I have a single full resolution picture from each copy for people to 
look at the EXTIF data, or to compare the images. Open the images in different 
tabs and flip back and forth and it is clear that they are not the same. In 
particular look at the shadows and the pano head. The two windows 
versions(import vs copy) are almost the same size and flipping back and forth I 
am not able to say there is a difference in this photo(I thought I saw 
differences in other photos, but could be mistaken about which copies of the 
photos I was viewing at the time). The mac version is 800 KB smaller. The darks 
are a touch darker and have a bit less detail than the one that is just copied 
from the memory card.

The resized photos I batch resized. I made no other changes. The image 
comparison photos I made NO changes. That is what the respective work flows 
created and they are not the same.

It is interesting to look at the exif data with a  tool that can look at it in 
depth such as 
http://regex.info/exif.cgi

To make it easy for people here are direct links to the exif data for the 
respective photos. A lot of the settings to not mean anything to me. I would be 
interested in what other people think of the settings that have different 
values for the different copies and what those settings may do.

http://regex.info/exif.cgi?imgurl=http%3A%2F%2Fkvtours.com%2Ftest-photos%2Fimage-comparision%2FWindows%2520Copy1.JPG

http://regex.info/exif.cgi?imgurl=http%3A%2F%2Fkvtours.com%2Ftest-photos%2Fimage-comparision%2FWindows%2520Import1.JPG

http://regex.info/exif.cgi?imgurl=http%3A%2F%2Fkvtours.com%2Ftest-photos%2Fimage-comparision%2Fmac1.jpg


As far as stitching problems go, they seem to have resolved themselves. I may 
play around and see if I can recreate the error in the windows import version, 
but at this time I have no idea what I where to start as I have no idea why it 
works now, when it did not earlier despite all that I was trying to do to 
correct it.

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