Here's the trace:
#0 0x00002aaaaae61737 in hwloc__xml_export_object (output=0x7fffffffd890,
topology=0x695f10, obj=0x2aaaab139b28)
at topology-xml.c:1094
#1 0x00002aaaaae61b69 in hwloc___nolibxml_prepare_export (topology=0x695f10,
xmlbuffer=0x698a70 "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<!DOCTYPE
topology SYSTEM \"hwloc.dtd\">\n<topology>\n <object type=\"Unknown\"
os_level=\"-1424778408\" os_index=\"10922\" cpuset=\"0xf...f\"
complete_cpuset=\"0xf...f\" onl"...,
buflen=16384) at topology-xml.c:1193
#2 0x00002aaaaae61be0 in hwloc__nolibxml_prepare_export (topology=0x695f10,
bufferp=0x7fffffffd988, buflenp=0x7fffffffd97c)
at topology-xml.c:1207
#3 0x00002aaaaae61d02 in opal_hwloc122_hwloc_topology_export_xmlbuffer
(topology=0x695f10, xmlbuffer=0x7fffffffd988,
buflen=0x7fffffffd97c) at topology-xml.c:1281
#4 0x00002aaaaae529f4 in opal_hwloc_compare (topo1=0x695f10, topo2=0x6915c0,
type=22 '\026') at base/hwloc_base_dt.c:183
#5 0x00002aaaaadf348c in opal_dss_compare (value1=0x695f10, value2=0x6915c0,
type=22 '\026') at dss/dss_compare.c:39
#6 0x00002aaaaad9b5f7 in process_orted_launch_report (fd=-1, event=1,
data=0x6444d0) at base/plm_base_launch_support.c:564
#7 0x00002aaaaae3881f in event_process_active_single_queue (base=0x60dd60,
activeq=0x6111e0) at event.c:1329
#8 0x00002aaaaae38c71 in event_process_active (base=0x60dd60) at event.c:1396
#9 0x00002aaaaae3902b in opal_libevent2012_event_base_loop (base=0x60dd60,
flags=1) at event.c:1598
#10 0x00002aaaaadf080d in opal_progress () at runtime/opal_progress.c:189
#11 0x00002aaaaad9bbfa in orte_plm_base_daemon_callback (num_daemons=2) at
base/plm_base_launch_support.c:666
#12 0x00002aaaaada49e1 in plm_slurm_launch_job (jdata=0x67a500) at
plm_slurm_module.c:404
#13 0x0000000000403822 in orterun (argc=4, argv=0x7fffffffe1d8) at orterun.c:817
#14 0x0000000000402aa3 in main (argc=4, argv=0x7fffffffe1d8) at main.c:13
And the error report
Program received signal SIGSEGV, Segmentation fault.
0x00002aaaaae61737 in hwloc__xml_export_object (output=0x7fffffffd890,
topology=0x695f10, obj=0x2aaaab139b28)
at topology-xml.c:1094
1094 sprintf(tmp, "%llu", (unsigned long long)
obj->memory.page_types[i].count);
(gdb) print obj
$1 = (opal_hwloc122_hwloc_obj_t) 0x2aaaab139b28
(gdb) print *obj
$2 = {type = 2870188824, os_index = 10922, name = 0x2aaaab139b18
"\b\233\023\253\252*", memory = {total_memory = 6579376,
local_memory = 6579376, page_types_len = 2870188856, page_types =
0x2aaaab139b38}, attr = 0x2aaaab139b48,
depth = 2870188872, logical_index = 10922, os_level = -1424778408,
next_cousin = 0x2aaaab139b58,
prev_cousin = 0x2aaaab139b68, parent = 0x2aaaab139b68, sibling_rank =
2870188920, next_sibling = 0x2aaaab139b78,
prev_sibling = 0x2aaaab139b88, arity = 2870188936, children = 0x2aaaab139b98,
first_child = 0x2aaaab139b98,
last_child = 0x2aaaab139ba8, userdata = 0x2aaaab139ba8, cpuset =
0x2aaaab139bb8, complete_cpuset = 0x2aaaab139bb8,
online_cpuset = 0x2aaaab139bc8, allowed_cpuset = 0x2aaaab139bc8, nodeset =
0x2aaaab139bd8,
complete_nodeset = 0x2aaaab139bd8, allowed_nodeset = 0x2aaaab139be8,
distances = 0x2aaaab139be8,
distances_count = 2870189048, infos = 0x2aaaab139bf8, infos_count =
2870189064}
(gdb) print obj->memory
$3 = {total_memory = 6579376, local_memory = 6579376, page_types_len =
2870188856, page_types = 0x2aaaab139b38}
(gdb) print obj->memory.page_types
$4 = (struct opal_hwloc122_hwloc_obj_memory_page_type_s *) 0x2aaaab139b38
(gdb) print i
$5 = 1612
(gdb) print obj->memory.page_types[1600]
$6 = {size = 0, count = 0}
(gdb) print obj->memory.page_types[1612]
Cannot access memory at address 0x2aaaab13fff8
(gdb) print obj->memory.page_types[1611]
$7 = {size = 0, count = 0}
(gdb)
The whole obj looks like trash to me. I looked a little more - the object
referenced is the root object:
1193 hwloc__xml_export_object (&output, topology,
hwloc_get_root_obj(topology));
I'm continuing to look in case I'm doing something stupid, but the code is
pretty linear here - unpack, import, export for compare.
On Sep 24, 2011, at 8:59 AM, Jeff Squyres wrote:
> Here's some feedback from Ralph -- any idea what's going wrong here?
>
> -----
>
> 1. I export a topology into xml using
>
> hwloc_topology_export_xmlbuffer(t, &xmlbuffer, &len);
>
> I then pack and send the string.
>
> 2. I unpack the string on the other end and import it into a topology
> hwloc_topology_init(&t);
> if (0 != (rc = hwloc_topology_set_xmlbuffer(t, xmlbuffer,
> strlen(xmlbuffer)))) {
> hwloc_topology_destroy(t);
> goto cleanup;
> }
> hwloc_topology_load(t);
>
> 3. I then need to compare two topologies, so I export the topology I received
> into another xml string
> hwloc_topology_export_xmlbuffer(t1, &x1, &l1);
>
> It is this export that fails, which implies to me that somehow the import
> didn't work right. Note that this code worked fine with libxml2, so this is a
> regression.
>
>
> On Sep 22, 2011, at 9:39 AM, Jeff Squyres wrote:
>
>> Yes, I can get some testing of the ompi branch pretty quickly. I can bring
>> in a new copy of this later today and see what we can see.
>>
>> Many thanks!
>>
>>
>> On Sep 19, 2011, at 9:05 AM, Brice Goglin wrote:
>>
>>> I pushed the new minimalistic XML import/export implementation without
>>> libxml2 to the nolibxml branch. If libxml2 is available, it's still used
>>> by default. --disable-libxml2 or some env variables can be used for
>>> force the minimalistic implementation if needed. The minimalistic implem
>>> is only guaranteed to import XML files that were generated by hwloc
>>> (even if libxml was enabled there).
>>>
>>> I also backported most of this to the new v1.2-ompi branch (required to
>>> backport some other XML cleanups from trunk). This branch will now serve
>>> as a base for Open MPI's embedded hwloc. The idea is to have a complete
>>> v1.2 + nolibxml somewhere so that we can at least run make check (Open
>>> MPI does not embed enough to run hwloc's make check).
>>>
>>> How do we proceed now? Can we have the OMPI guys test the new code soon?
>>> Should I wait for their feedback before merging the nolibxml branch into
>>> the trunk? I'd like to merge this in v1.3 too (and basically release rc2
>>> as the actual first feature-complete RC), so getting feedback early
>>> might be appreciated.
>>>
>>> Brice
>>>
>>> _______________________________________________
>>> hwloc-devel mailing list
>>> hwloc-de...@open-mpi.org
>>> http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-devel
>>
>>
>> --
>> Jeff Squyres
>> jsquy...@cisco.com
>> For corporate legal information go to:
>> http://www.cisco.com/web/about/doing_business/legal/cri/
>>
>>
>> _______________________________________________
>> hwloc-devel mailing list
>> hwloc-de...@open-mpi.org
>> http://www.open-mpi.org/mailman/listinfo.cgi/hwloc-devel
>
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
