2. The Problem of Paleospecies
Paleontologists have to recognize species from their fossil remains. The
problem of "What is a paleospecies?" led Niles Eldredge and Stephen Jay
Gould to propose the theory of punctuated equilibria. The term
"paleospecies" makes explicit the distinction between the classification of
species from fossil remains and the process of recognizing species in modern
populations. This problem involves geology, taphonomy, taxonomy, and --
though often ignored -- geography.

Mayr's Biological Species Concept uses the criterion of reproductive
isolation to distinguish species in modern populations. Paleontologists who
pursue taxonomic endeavors (which includes most of them) have to classify
their finds generally based upon morphological features. The rareness of
preservation of tissues containing DNA, or even of soft tissues, limits the
range of diagnostic characters which may be utilized. The paleontologist has
no access to such information. (Whether modern biologists really do have
access to that information is a matter of some little debate in the
literature.)

The fossil record is incomplete. This incompleteness has many contributing
factors. Geological processes may cause to confusion or error, as
sedimentary deposition rates may vary, erosion may erase some strata,
compression may turn possible fossils into unrecognizable junk, and various
other means by which the local fossil record can be turned into the
equivalent of a partially burned book, which is then unbound, pages perhaps
shuffled, and from which a few pages are retrieved. Beyond geology, there
remains taphonomy -- the study of how organisms come to be preserved as
fossils. Here, there are further issues to be addressed. Hard parts of
organisms fossilize preferentially. The conditions under which even those
parts may become fossilized are fairly specialized. All this results in a
heavily skewed distribution of even what parts of organisms become
fossilized, and that affects which features of morphology are available for
use in classification. The issue of geography enters into all this, as a
consequence of the fact that living lineages occupy ecological niches, and
those niches are bound to certain features of geography.

Paleospecies, then, have to be recognized as species from morphology alone,
where the available morphological characters are drawn from a skewed
distribution, the pattern of fossilization is skewed, and the geographic
correlates of fossilization are limited in extent.

3. Patterns of speciation from neontological study
Eldredge and Gould's insight into paleontological processes was to derive
their understanding of paleospecies from living biological species. In this
manner, it can be made clear what PE means for the concept of paleospecies.

First, modern species appear to have derived from cladogenesis, the
splitting of a daughter species from an ancestral species rather than
transformation of the ancestral species in toto. This is a multiplication of
species, and without it, the diversity of the living systems that we see
would be impossible.

Second, the mode of speciation most often seen is also identified from
modern populations. That mode is allopatric speciation of peripheral
isolates, or peripatric speciation in Mayr's terminology. Peripatric
speciation states that a population of an ancestral species in a
geographically peripheral part of the ancestral range is modified over time
until even when the ancestral and daughter populations come into contact,
there is reproductive isolation. While saltational speciation by change in
ploidy is observed to occur in modern populations, this form of speciation
is also known to be rare (except in plants). The incipient speciation of
clinal forms has recently become very controversial, and is also likely to
be rare in any case. Sympatric speciation, the production of a daughter
species within the geographic range of the parent species, likewise is held
to be a very rare event seen primarily in insect and parasite lineages.

Third, the frequency with which peripatric speciation occurs in modern
lineages can be seen as "rare". This rarity is different from the rarity
discussed in the last item. There, we compared how often certain modes of
speciation were seen compared to other modes of speciation. Here, we want to
know how common it is for a species to produce a daughter species by
peripatric speciation. The answer is, "Not very common at all." This rarity
means that a species may produce zero, one, or perhaps a few daughter
species during its entire time span of existence.

Fourth, the period of transition between parent species and daughter species
is short compared to the period of time a species exists as a distinct form.
When a small sub-population is isolated from the rest of the population of a
species, the particular set of variations in the sub-population is much
smaller than that in the remainder of the population. These variations, when
in conjunction with suitable features of geographic locale, climate, and
resources, can lead to rapid development of reproductive isolation from the
ancestral population. The reduction in variation due to small sub-population
size is known as the "founder effect".

Fifth, significant adaptations developed or accentuated in the daughter
species can lead to the rapid dispersal and establishment of a daughter
species throughout the range of the ancestral species, or into new ranges.
The ecological processes of dispersal and succession can occur very quickly
compared to evolutionary processes of change.

Sixth, the principles of gene flow, genetic homeostasis, and large
population size inhibit widespread ancestral populations from much
directional (adaptive) change. Any adaptive change found in the ancestral
population is likely to be small and unrelated to evolutionary trends.


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