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From my little knowledge, I prefer not cataloging more datasets than necessary in the master. I don't know if this is a wrong positioning. Is it?
Nevertheless, my main doubts are the catalogs I should use...
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Reserving the Master Catalog for the operating system, and as few other datasets as possible, is a good idea. As far as other catalogs are concerned, I like a dsname standard that separates PROD from TEST/DEVELOPMENT as early as possible in the name. That is, in the qualifier as far to the left as possible, ideally in the first qualifier. Then I can direct PROD to one catalog, or one small set of catalogs, and keep all other activity away from it. So a programmer that might mess up a catalog can't affect my PROD workload. Remember that PROD is most often the revenue-producing part of the IT environment; protect it. Don't go overboard defining catalogs; maintenance can get to be a real headache and disaster recovery can be adversely affected. I've worked mostly in small shops and considered that 3-4 USERCATALOGS was more than sufficient (PROD, DataBase, Systems Programming and all other). YMMV.

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