No worries...data actually has 0.1 eV steps...a bit finer than I would
use for Fe, but not grossly oversampled.
For comparison between these data sets , you might try just subtracting
the y value of the 1st point (ok..in data file 1st point is NAN)...maybe
average of the first 3 - 5 points...then divide by the value of the last
point (or avg of a few).
This will allow you to compare data sets on reasonable scale and look
for changes.
-R.
On 2024-04-13 10:41 a.m., jesse walters wrote:
Dear Robert, Apologies, the large h5 files were how the data were sent
to me. I figured out how to export a single csv file, which is
attached. Unfortunately, these data were collected without my input
and I am trying to help the student make
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Dear Robert,
Apologies, the large h5 files were how the data were sent to me. I
figured out how to export a single csv file, which is attached.
Unfortunately, these data were collected without my input and I am
trying to help the student make the data usable if possible. For my
own projects I collected Fe K edge XAS spectra from 7000 to 7350 eV. I
have not seen all the data from the session, but I believe the data
were only collected over the range 7100 to 7150 eV for all analyses. I
guess these are not useable?
Cheers,
Jesse
On Sat, Apr 13, 2024 at 7:17 PM Robert Gordon
<moyie.instit...@gmail.com> wrote:
Two things: 1. This is a volunteer community. Asking us to
download a massive file and parse through it to find a data file
is not a reasonable request. Pick an example and attach it as a
txt file (energy, mu(E) or E, I0, IF ). In fact, since
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Two things:
1. This is a volunteer community. Asking us to download a massive
file and parse through it to find a data file is not a reasonable
request. Pick an example and attach it as a txt file (energy,
mu(E) or E, I0, IF ). In fact, since the graph looks like the data
were grossly over-sampled for XANES, you might want to sieve it to
a more reasonable step size such as 0.1 to 0.3 eV through the
edge. That will also help with file size.
2. If the graph you attached is representative of the data, the
data were not collected over a large enough energy range for
normalisation. Next time, try +/- 100 - 200 eV below and above the
edge (maybe 250 above).
-R.
On 2024-04-10 5:22 a.m., jesse walters wrote:
Hi all, I have some spectra collected by a collaborator,
Francesco Ressico, a PhD student at Uni Bologna, (see attached
.h5 file below) and we are having trouble normalizing the Fe K
edge spectra. The data are for serpentine group minerals
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Hi all,
I have some spectra collected by a collaborator, Francesco
Ressico, a PhD student at Uni Bologna, (see attached .h5 file
below) and we are having trouble normalizing the Fe K edge
spectra. The data are for serpentine group minerals and were
collected in fluorescence mode. In the attached file, the correct
X array value is 'energy_enc', the data type is 'xas', and the y
array should be 'mu_fluo_det0'. The spectra are already
normalized for the incoming beam energy (although this can also
be done using 'flou_det0/i0'). There are multiple spectra in the
file, any one of them can be chosen to test the procedure.
After loading the spectra, I am able to plot the raw spectra
correctly (see attached). But when I try to normalize the pre and
post edge regions and plot the normalized spectra, the software
only gives a blank plot. I have tried changing the normalization
type, polynomial type, range, etc for both the pre and post edge,
but nothing seems to work. I also tested different spectra, but
with similar results.
Does anyone have suggestions for how these data can be normalized?
The h5 file is too large, so here is a dropbox link
https://urldefense.us/v3/__https://www.dropbox.com/scl/fi/d8k5s67vli0mq97ac520y/COR21_79_Xastransect_79_F1_THC.h5?rlkey=33ragg4p6x9rx65t9yvi5kewe&dl=0__;!!G_uCfscf7eWS!dcAIi3TTGN9d52IHU2K-pKiCEIZLi2wcrteKHRuCLDYpksIvgA0jwzrgeW_VC3t8LPIgcz9GYRSDukE9KV1keBVLwhyKueiVnIEhymk$
<https://urldefense.us/v3/__https://www.dropbox.com/scl/fi/d8k5s67vli0mq97ac520y/COR21_79_Xastransect_79_F1_THC.h5?rlkey=33ragg4p6x9rx65t9yvi5kewe&dl=0__;!!G_uCfscf7eWS!btLKhnEiyp5gMQfSDnHdxqgt2ie5vcVHW7e142vokJ-wEX6zZSIOcAyHsf5THg9ZlyyIsx7Vfm27ycKWAQg1_cysDdnW65aCQA$>
Sincerely,
Jesse Walters
--
Jesse B. Walters
Ambizione Fellow
Institut für Geologie
Universität Bern
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Jesse B. Walters
Ambizione Fellow
Institut für Geologie
Universität Bern
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