Hi, Something you might consider is using the Map Equation software provided by the developers. http://mapequation.org/code.html
I've found it is very very fast, allowing for multiple processors. You just need the graph in question in pajek format, which igraph can export. After this, you can bring the results back into R. It could be automated easily with some shell scripting. Cheers, Peter On Mon, May 12, 2014 at 6:42 AM, Alexander Struck < [email protected]> wrote: > Hi, > > has anyone any info on a memory limit of igraph which I may have missed in > the documentation? > I'd really like to use igraph's implementation of InfoMap but run into the > problem described below. > > Thanks, > Alexander > > > On May 6, 2014, at 11:21 AM, Alexander Struck < > [email protected]> wrote: > > > Dear all, > > > > while InfoMap runs smoothly on small graphs it appears to become > unresponsive on larger ones. My .RObj has the size of 28 MB and igraph > reports: > >> G > > IGRAPH DN-- 1282336 2507034 -- > > + attr: name (v/c) > > > > The R v3.0.2 process now runs 14+ hours on one core out of 16, Ubuntu > 12.04 uses 16 of the available 72 GB RAM. The latest igraph library > version is installed. > > Should I be more patient? What are my options here? I could make the > .RObj available on request. > > > > Many thanks and best regards, > > > > Alexander > > > > > > _______________________________________________ > > igraph-help mailing list > > [email protected] > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > > > Image Knowledge Gestaltung. An Interdisciplinary Laboratory > Cluster of Excellence Humboldt-Universität zu Berlin > > Alexander Struck > Shaping Knowledge > > Phone: +49 30 2093 46192 > E-Mail: [email protected] > URL: www.interdisciplinary-laboratory.hu-berlin.de > > Street Address: Sophienstrasse 22a, D-10178 Berlin > Postal Address: Unter den Linden 6, D-10099 Berlin > > > _______________________________________________ > igraph-help mailing list > [email protected] > https://lists.nongnu.org/mailman/listinfo/igraph-help > > -- Peter D Smits Grad student Committee on Evolutionary Biology University of Chicago [email protected] http://home.uchicago.edu/~psmits/home.html
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