Ah, I missed that point -- I remember that there was some discussion about licensing issues but I thought that was resolved :(
-- T. ------------------------------------------------------ From: Gábor Csárdi [email protected] Reply: Help for igraph users [email protected] Date: 12 May 2014 at 21:50:44 To: Help for igraph users [email protected] Subject: Re: [igraph] infomap unresponsive? on large graph in R env > It is not actually only lack of time, but the new version has an AGPL > license, which is not compatible with igraph's GPL. So the new will > probably never be in igraph, unless they change the license. > > Gabor > > On Mon, May 12, 2014 at 3:45 PM, Tamás Nepusz wrote: > > > Hi, > > > > I also suggest using the code from mapequation.org if the version found > > in igraph is not fast enough. For historical reasons, igraph contains an > > older version of the original code published by Martin Rosvall, and we > > haven’t had time yet to merge the new version of the algorithm into igraph. > > > > -- > > T. > > > > ------------------------------------------------------ > > From: Peter Smits [email protected] > > Reply: Help for igraph users [email protected] > > Date: 12 May 2014 at 18:18:09 > > To: Help for igraph users [email protected] > > Subject: Re: [igraph] infomap unresponsive? on large graph in R env > > > > > Hi, > > > > > > Something you might consider is using the Map Equation software provided > > by > > > the developers. http://mapequation.org/code.html > > > > > > I've found it is very very fast, allowing for multiple processors. You > > just > > > need the graph in question in pajek format, which igraph can export. > > After > > > this, you can bring the results back into R. It could be automated easily > > > with some shell scripting. > > > > > > Cheers, > > > > > > Peter > > > > > > > > > On Mon, May 12, 2014 at 6:42 AM, Alexander Struck < > > > [email protected]> wrote: > > > > > > > Hi, > > > > > > > > has anyone any info on a memory limit of igraph which I may have > > missed in > > > > the documentation? > > > > I'd really like to use igraph's implementation of InfoMap but run into > > the > > > > problem described below. > > > > > > > > Thanks, > > > > Alexander > > > > > > > > > > > > On May 6, 2014, at 11:21 AM, Alexander Struck < > > > > [email protected]> wrote: > > > > > > > > > Dear all, > > > > > > > > > > while InfoMap runs smoothly on small graphs it appears to become > > > > unresponsive on larger ones. My .RObj has the size of 28 MB and igraph > > > > reports: > > > > >> G > > > > > IGRAPH DN-- 1282336 2507034 -- > > > > > + attr: name (v/c) > > > > > > > > > > The R v3.0.2 process now runs 14+ hours on one core out of 16, Ubuntu > > > > 12.04 uses 16 of the available 72 GB RAM. The latest igraph library > > > > version is installed. > > > > > Should I be more patient? What are my options here? I could make the > > > > .RObj available on request. > > > > > > > > > > Many thanks and best regards, > > > > > > > > > > Alexander > > > > > > > > > > > > > > > _______________________________________________ > > > > > igraph-help mailing list > > > > > [email protected] > > > > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > > > > > > > > > > > > > > > > > > Image Knowledge Gestaltung. An Interdisciplinary Laboratory > > > > Cluster of Excellence Humboldt-Universität zu Berlin > > > > > > > > Alexander Struck > > > > Shaping Knowledge > > > > > > > > Phone: +49 30 2093 46192 > > > > E-Mail: [email protected] > > > > URL: www.interdisciplinary-laboratory.hu-berlin.de > > > > > > > > Street Address: Sophienstrasse 22a, D-10178 Berlin > > > > Postal Address: Unter den Linden 6, D-10099 Berlin > > > > > > > > > > > > _______________________________________________ > > > > igraph-help mailing list > > > > [email protected] > > > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > > > > > > > > > > > > > > > -- > > > Peter D Smits > > > Grad student > > > Committee on Evolutionary Biology > > > University of Chicago > > > [email protected] > > > http://home.uchicago.edu/~psmits/home.html > > > _______________________________________________ > > > igraph-help mailing list > > > [email protected] > > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > > > > > > > _______________________________________________ > > igraph-help mailing list > > [email protected] > > https://lists.nongnu.org/mailman/listinfo/igraph-help > > > _______________________________________________ > igraph-help mailing list > [email protected] > https://lists.nongnu.org/mailman/listinfo/igraph-help > _______________________________________________ igraph-help mailing list [email protected] https://lists.nongnu.org/mailman/listinfo/igraph-help
