Hi Mohamed and everyone, I agree with Johannes that using "new ImageJ()" is better for programmatic use, in that it is more flexible. That said, there is nothing "wrong" per se with calling "imagej.Main.launch()" if what you really want is for the ImageJ application to pop up. So no worries there.
As for your reported problem, I have a couple of questions: > If I use this instance to open an lsm image with 2 channels Please note that ImageJ2 does not support LSM out of the box. You need either Bio-Formats or LSM_Reader for that (which at the moment are ImageJ1 plugins, and will be run using the IJ2's legacy layer). If you open an LSM with File > Open right now, I believe it will open as a vanilla TIFF file, which may not read all the metadata, and may misinterpret some Zeiss-specific image parameters. > Note that opening the imageJ from the provided executable works fine. Hmm, you mean if you launch ImageJ2 from the launcher, then open your LSM file, it behaves as expected? Then there may indeed be a bug lurking here somewhere. Do you have a sample non-working image file you can upload via the Help > Upload Sample Image command? That, along with specific brief instructions about what doesn't work, would be very helpful to diagnose and fix the problem. Thanks, Curtis On Mon, Jun 24, 2013 at 9:54 AM, Mohamed Tleis <mohammedtl...@hotmail.com>wrote: > Dear Developers, > > from inside my code I am calling imageJ through > > ImageJ ij = new ImageJ.Main.launch(); > > If I use this instance to open an lsm image with 2 channels, the image > isn't loaded properly, only one channel is visable and trying to split > channels will ask me for arguments and won't be done. > Note that opening the imageJ from the provided executable works fine. I > suppose the launch method needs some arguments to be passed. Can you please > show me an example to how to do this? > > Best Regards, > M. Tleis > > ______________________________**_________________ > ImageJ-devel mailing list > ImageJ-devel@imagej.net > http://imagej.net/mailman/**listinfo/imagej-devel<http://imagej.net/mailman/listinfo/imagej-devel> >
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