On 27/02/14 20:01, Mark Hiner wrote:
These datasets definitely look worse from the script than Fiji/IJ2,
which is reasonable since they aren't composited or autoscaled or
anything... but they do look correct to me and opened without error.
Anyway, I hope the latest Fiji works for you. Give it a try and let me
know if you run into any more problems.
Thank you for your persistence!
Hi Mark,
thank you, the latest Fiji works! The composite image is completely
black, but that could be just a scaling issue. Or did it look better for
you?
I'll keep using Fiji for running the scripts from now on, I don't see
any benefit in managing the dependencies myself now that you got it
working.
So now I should get to the real work and learn the ImgLib2 API and
convert my existing script :)
Best,
Harri
--
__________________________________________________
Harri Jäälinoja
Light Microscopy Unit
Institute of Biotechnology, University of Helsinki
http://www.biocenter.helsinki.fi/bi/lmu/
+358 9 191 59370 fax +358 9 191 59366
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