Hi Johannes,
Thanks for the reply.
If I try to force Eclipse to process annotations. I get this error...
java.io.IOException: org.eclipse.core.internal.resources.ResourceException:
Resource '/JEX/bin/META-INF/json/org.scijava.plugin.Plugin' does not exist.
at
org.eclipse.jdt.internal.apt.pluggable.core.filer.IdeInputFileObject.openInputStream(IdeInputFileObject.java:88)
at
org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:224)
at
org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:118)
at
org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:91)
at
org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:91)
at
org.eclipse.jdt.internal.compiler.apt.dispatch.RoundDispatcher.handleProcessor(RoundDispatcher.java:139)
at
org.eclipse.jdt.internal.compiler.apt.dispatch.RoundDispatcher.round(RoundDispatcher.java:121)
at
org.eclipse.jdt.internal.compiler.apt.dispatch.BaseAnnotationProcessorManager.processAnnotations(BaseAnnotationProcessorManager.java:159)
at
org.eclipse.jdt.internal.apt.pluggable.core.dispatch.IdeAnnotationProcessorManager.processAnnotations(IdeAnnotationProcessorManager.java:134)
at
org.eclipse.jdt.internal.compiler.Compiler.processAnnotations(Compiler.java:820)
at org.eclipse.jdt.internal.compiler.Compiler.compile(Compiler.java:434)
at
org.eclipse.jdt.internal.core.builder.AbstractImageBuilder.compile(AbstractImageBuilder.java:366)
at
org.eclipse.jdt.internal.core.builder.BatchImageBuilder.compile(BatchImageBuilder.java:178)
at
org.eclipse.jdt.internal.core.builder.AbstractImageBuilder.compile(AbstractImageBuilder.java:303)
at
org.eclipse.jdt.internal.core.builder.BatchImageBuilder.build(BatchImageBuilder.java:60)
at
org.eclipse.jdt.internal.core.builder.JavaBuilder.buildAll(JavaBuilder.java:254)
at
org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:173)
at
org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:733)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
at
org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:206)
at
org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:246)
at
org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:299)
at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42)
at
org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:302)
at
org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:263)
at
org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:401)
at org.eclipse.core.internal.resources.Project$1.run(Project.java:618)
at
org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2345)
at
org.eclipse.core.internal.resources.Project.internalBuild(Project.java:597)
at org.eclipse.core.internal.resources.Project.build(Project.java:114)
at
org.eclipse.jdt.internal.ui.util.CoreUtility$BuildJob.run(CoreUtility.java:161)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53)
Caused by: org.eclipse.core.internal.resources.ResourceException: Resource
'/JEX/bin/META-INF/json/org.scijava.plugin.Plugin' does not exist.
at
org.eclipse.core.internal.resources.Resource.checkExists(Resource.java:341)
at
org.eclipse.core.internal.resources.Resource.checkAccessible(Resource.java:215)
at org.eclipse.core.internal.resources.File.getContents(File.java:287)
at org.eclipse.core.internal.resources.File.getContents(File.java:278)
at
org.eclipse.jdt.internal.apt.pluggable.core.filer.IdeInputFileObject.openInputStream(IdeInputFileObject.java:86)
... 31 more
Any idea why the file is not created on processing?
Thanks,
Jay
On May 6, 2014, at 12:43 PM, Johannes Schindelin <johannes.schinde...@gmx.de>
wrote:
> Hi Jay,
>
> On Tue, 6 May 2014, Jay Warrick wrote:
>
>> You run the application once, it fixes the jar file but the changes to
>> the jar file on disk are not reflected in the jar file that is loaded
>> already in memory for running the application (at least as indicated by
>> the getResources() method).
>
> That is not the intended workflow -- as both Curtis & I pointed out.
>
> The annotation indexes are supposed to be generated at compile time. The
> way we do that is fully compliant with the Java standard.
>
> By using an environment that does not abide by that standard -- Eclipse --
> you make it your responsibility to ensure that the annotation indexes are
> generated correctly.
>
> You could do that by making unit tests an integral part of your build
> process *before* bundling into a .jar (which you should do anyway, if you
> want to follow best Java practices), or by running the EclipseHelper in
> another manner.
>
> You could do that by making it a Maven project and importing it into
> Eclipse.
>
> You could do that by forcing Eclipse into running the annotation
> processors (as mandated by the Java standard).
>
> You could figure out another way to make the annotation indexing run
> before packaging the sources into .jar files.
>
> What will not work is to continue to try to generate the annotation
> indexes at a stage that is way later than compile time.
>
> Ciao,
> Johannes
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