Hi Jay, > Any idea why the file is not created on processing?
Can you please push your changes to a branch of JEX? Otherwise there is not enough information to understand what you tried to do. Thanks, Curtis On Tue, May 6, 2014 at 5:13 PM, Jay Warrick <warr...@wisc.edu> wrote: > Hi Johannes, > > Thanks for the reply. > > If I try to force Eclipse to process annotations. I get this error... > > java.io.IOException: > org.eclipse.core.internal.resources.ResourceException: Resource > '/JEX/bin/META-INF/json/org.scijava.plugin.Plugin' does not exist. > at > org.eclipse.jdt.internal.apt.pluggable.core.filer.IdeInputFileObject.openInputStream(IdeInputFileObject.java:88) > at > org.scijava.annotations.AnnotationProcessor$Writer.openInput(AnnotationProcessor.java:224) > at > org.scijava.annotations.AbstractIndexWriter.merge(AbstractIndexWriter.java:118) > at > org.scijava.annotations.AbstractIndexWriter.write(AbstractIndexWriter.java:91) > at > org.scijava.annotations.AnnotationProcessor.process(AnnotationProcessor.java:91) > at > org.eclipse.jdt.internal.compiler.apt.dispatch.RoundDispatcher.handleProcessor(RoundDispatcher.java:139) > at > org.eclipse.jdt.internal.compiler.apt.dispatch.RoundDispatcher.round(RoundDispatcher.java:121) > at > org.eclipse.jdt.internal.compiler.apt.dispatch.BaseAnnotationProcessorManager.processAnnotations(BaseAnnotationProcessorManager.java:159) > at > org.eclipse.jdt.internal.apt.pluggable.core.dispatch.IdeAnnotationProcessorManager.processAnnotations(IdeAnnotationProcessorManager.java:134) > at > org.eclipse.jdt.internal.compiler.Compiler.processAnnotations(Compiler.java:820) > at > org.eclipse.jdt.internal.compiler.Compiler.compile(Compiler.java:434) > at > org.eclipse.jdt.internal.core.builder.AbstractImageBuilder.compile(AbstractImageBuilder.java:366) > at > org.eclipse.jdt.internal.core.builder.BatchImageBuilder.compile(BatchImageBuilder.java:178) > at > org.eclipse.jdt.internal.core.builder.AbstractImageBuilder.compile(AbstractImageBuilder.java:303) > at > org.eclipse.jdt.internal.core.builder.BatchImageBuilder.build(BatchImageBuilder.java:60) > at > org.eclipse.jdt.internal.core.builder.JavaBuilder.buildAll(JavaBuilder.java:254) > at > org.eclipse.jdt.internal.core.builder.JavaBuilder.build(JavaBuilder.java:173) > at > org.eclipse.core.internal.events.BuildManager$2.run(BuildManager.java:733) > at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) > at > org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:206) > at > org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:246) > at > org.eclipse.core.internal.events.BuildManager$1.run(BuildManager.java:299) > at org.eclipse.core.runtime.SafeRunner.run(SafeRunner.java:42) > at > org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:302) > at > org.eclipse.core.internal.events.BuildManager.basicBuild(BuildManager.java:263) > at > org.eclipse.core.internal.events.BuildManager.build(BuildManager.java:401) > at > org.eclipse.core.internal.resources.Project$1.run(Project.java:618) > at > org.eclipse.core.internal.resources.Workspace.run(Workspace.java:2345) > at > org.eclipse.core.internal.resources.Project.internalBuild(Project.java:597) > at > org.eclipse.core.internal.resources.Project.build(Project.java:114) > at > org.eclipse.jdt.internal.ui.util.CoreUtility$BuildJob.run(CoreUtility.java:161) > at org.eclipse.core.internal.jobs.Worker.run(Worker.java:53) > Caused by: org.eclipse.core.internal.resources.ResourceException: Resource > '/JEX/bin/META-INF/json/org.scijava.plugin.Plugin' does not exist. > at > org.eclipse.core.internal.resources.Resource.checkExists(Resource.java:341) > at > org.eclipse.core.internal.resources.Resource.checkAccessible(Resource.java:215) > at > org.eclipse.core.internal.resources.File.getContents(File.java:287) > at > org.eclipse.core.internal.resources.File.getContents(File.java:278) > at > org.eclipse.jdt.internal.apt.pluggable.core.filer.IdeInputFileObject.openInputStream(IdeInputFileObject.java:86) > ... 31 more > > Any idea why the file is not created on processing? > > Thanks, > > Jay > > > > On May 6, 2014, at 12:43 PM, Johannes Schindelin < > johannes.schinde...@gmx.de> wrote: > > > Hi Jay, > > > > On Tue, 6 May 2014, Jay Warrick wrote: > > > >> You run the application once, it fixes the jar file but the changes to > >> the jar file on disk are not reflected in the jar file that is loaded > >> already in memory for running the application (at least as indicated by > >> the getResources() method). > > > > That is not the intended workflow -- as both Curtis & I pointed out. > > > > The annotation indexes are supposed to be generated at compile time. The > > way we do that is fully compliant with the Java standard. > > > > By using an environment that does not abide by that standard -- Eclipse > -- > > you make it your responsibility to ensure that the annotation indexes are > > generated correctly. > > > > You could do that by making unit tests an integral part of your build > > process *before* bundling into a .jar (which you should do anyway, if you > > want to follow best Java practices), or by running the EclipseHelper in > > another manner. > > > > You could do that by making it a Maven project and importing it into > > Eclipse. > > > > You could do that by forcing Eclipse into running the annotation > > processors (as mandated by the Java standard). > > > > You could figure out another way to make the annotation indexing run > > before packaging the sources into .jar files. > > > > What will not work is to continue to try to generate the annotation > > indexes at a stage that is way later than compile time. > > > > Ciao, > > Johannes > >
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