Hi Curtis Thanks, it worked perfectly - btw I doubled posted on the fiji list as I figured this question might be of interest to any fiji users trying out the new scripting.
Brian On Mon, Aug 4, 2014 at 5:06 PM, Curtis Rueden <ctrue...@wisc.edu> wrote: > Hi Brian, > > Thanks for the reports: > > > 1. The last couple of days when I try to extract the Fiji Linux 64 > > continuous release tar file I get an error "truncated gzip input". I can > > work around this by downloading the "all platforms" package instead. > > Hmm, I did not see this problem when I tried just now. Perhaps the > download itself is not completing successfully? It should be ~141MB. If it > keeps happening, we could add an MD5 sum for verification if that would be > helpful. > > > 2. It seems that the ops service is not getting injected into my jython > > scripts. Scripts works fine (ie data and display are injuected) until I > try > > to call an op. Then I get "ops is not defined". This only happens when > > using a Fiji release. If I run imagej2 through a development environment > > using maven it works. > > Yeah, I noticed this same problem the other day, and fixed it on master: > > > https://github.com/scijava/scijava-common/commit/f88984cb587c314c53e06fdce606d4cecf3a4813 > > Using scijava-common-2.28.0 or later will avoid the issue. Or you can work > around it by writing: > > # @net.imagej.ops.OpService ops > > Regards, > Curtis > > > On Mon, Aug 4, 2014 at 3:32 PM, Brian Northan <bnort...@gmail.com> wrote: > >> Hi List >> >> A couple of things... >> >> 1. The last couple of days when I try to extract the Fiji Linux 64 >> continuous release tar file I get an error "truncated gzip input". I can >> work around this by downloading the "all platforms" package instead. >> >> 2. It seems that the ops service is not getting injected into my jython >> scripts. Scripts works fine (ie data and display are injuected) until I >> try to call an op. Then I get "ops is not defined". This only happens >> when using a Fiji release. If I run imagej2 through a development >> environment using maven it works. >> >> Thanks, an example script is below >> >> Brian >> >> # @DatasetService data >> # @DisplayService display >> # @OpService ops >> >> # define a local directory to get the images from >> directory="/home/bnorthan/Brian2014/Images/TempForEasyAccess/" >> >> # use 2-channels of the lena image for test image >> image1Name="lena_red.tif" >> image2Name="lena_green.tif" >> >> # open first image >> image1=data.open(directory+image1Name) >> display.createDisplay(image1.getName(), image1); >> >> # open second image >> image2=data.open(directory+image2Name) >> display.createDisplay(image2.getName(), image2); >> >> # add the images >> image3 = ops.add(image1,image2) >> display.createDisplay(image3.getName(), image3) >> >> >> >> >> _______________________________________________ >> ImageJ-devel mailing list >> ImageJ-devel@imagej.net >> http://imagej.net/mailman/listinfo/imagej-devel >> >> >
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