Ok thanks. However even if I enable JFileChoose I still have an error which prevent me to save the file. See below.
------------------------------------------ (Fiji Is Just) ImageJ 2.0.0-rc-22/1.49m; Java 1.7.0_65 [64-bit]; Linux 3.13.0-44-generic; 80MB of 4362MB (1%) java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.IllegalArgumentException at net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:256) at net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:160) at ij.IJ.runPlugIn(IJ.java) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:745) Caused by: java.util.concurrent.ExecutionException: java.lang.IllegalArgumentException at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:188) at net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:252) ... 5 more Caused by: java.lang.IllegalArgumentException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at org.scijava.util.ReflectedUniverse.exec(ReflectedUniverse.java:314) at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:327) at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:310) at net.imagej.plugins.commands.io.SaveAsImage.run(SaveAsImage.java:101) at org.scijava.command.CommandModule.run(CommandModule.java:201) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65) at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) ... 1 more ------------------------------------------- I can't tell if it's related or another bug... -- Hadrien Mary Ph.D student in Biology Tournier-Gachet Team CNRS - LBCMCP - UMR 5088 Université de Toulouse - Bât. 4R3B1 118, route de Narbonne - 31062 Toulouse On Wed, Jan 21, 2015 at 8:04 PM, Mark Hiner <hi...@wisc.edu> wrote: > Hi Hadrien, > > Thanks for reporting this. I finally tracked it down when working on > updating File > Export > Image... and File > Import > Image... to use the > fixes to OME-TIFF writing[1]. > > The issue has to do with whether or not the JFileChooser is enabled[2]. A > temporary workaround should be just to enable the use of the JFileChooser. > I'm hoping to have an actual fix soon though. > > Thanks again! > - Mark > > [1] http://imagej.net/pipermail/imagej-devel/2015-January/002407.html > [2] https://github.com/imagej/imagej-legacy/issues/101 > > On Wed, Jan 14, 2015 at 12:57 PM, Hadrien Mary <hadrien.m...@gmail.com> > wrote: >> >> Hi, >> >> I'd like to report a bug I noticed some time ago. >> >> I have an error when I try to save an OME Tiff file with File > Export >> > Image (to save it as an OME Tiff format). Note that it works well >> when the saved image is not an OME Tiff file. >> >> The bug is weird. >> >> First when I click File > Export > Image, gtk file manager open to ask >> where I want to save the file. The default filename is test.ometif >> (instead of test.ome.tif, current filename). I change the filename to >> be test.ome.tif (same bug when I don't change it) and when I click >> "save", I have this message : >> >> ------------------------------------ >> (Fiji Is Just) ImageJ 2.0.0-rc-21/1.49m; Java 1.7.0_65 [64-bit]; Linux >> 3.13.0-44-generic; 80MB of 3600MB (2%) >> >> java.lang.RuntimeException: java.util.concurrent.ExecutionException: >> java.lang.IllegalArgumentException >> at >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:256) >> at >> net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:160) >> at ij.IJ.runPlugIn(IJ.java) >> at ij.Executer.runCommand(Executer.java:131) >> at ij.Executer.run(Executer.java:64) >> at java.lang.Thread.run(Thread.java:745) >> Caused by: java.util.concurrent.ExecutionException: >> java.lang.IllegalArgumentException >> at java.util.concurrent.FutureTask.report(FutureTask.java:122) >> at java.util.concurrent.FutureTask.get(FutureTask.java:188) >> at >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:252) >> ... 5 more >> Caused by: java.lang.IllegalArgumentException >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at org.scijava.util.ReflectedUniverse.exec(ReflectedUniverse.java:314) >> at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:327) >> at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:310) >> at net.imagej.plugins.commands.io.SaveAsImage.run(SaveAsImage.java:101) >> at org.scijava.command.CommandModule.run(CommandModule.java:201) >> at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167) >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126) >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65) >> at >> org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164) >> at java.util.concurrent.FutureTask.run(FutureTask.java:262) >> at >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) >> at >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) >> ... 1 more >> ------------------------------------ >> >> I currently use BF exporter function which is working well for my >> daily use. So don't rush on this. >> >> Thank you >> >> -- >> Hadrien Mary >> >> Ph.D student in Biology >> Tournier-Gachet Team >> CNRS - LBCMCP - UMR 5088 >> >> Université de Toulouse - Bât. 4R3B1 >> 118, route de Narbonne - 31062 Toulouse >> >> _______________________________________________ >> ImageJ-devel mailing list >> ImageJ-devel@imagej.net >> http://imagej.net/mailman/listinfo/imagej-devel > > _______________________________________________ ImageJ-devel mailing list ImageJ-devel@imagej.net http://imagej.net/mailman/listinfo/imagej-devel
