Very nice. Thanks Mark! Le 22 janv. 2015 11:51, "Mark Hiner" <hi...@wisc.edu> a écrit :
> Sorry Hadrien - I didn't go into much detail on my last e-mail. You > would've needed development versions of several other libraries to fix the > bugs in "File > Export > Image...". > > Anyway, I just uploaded all my fixes to Fiji. If you update, exporting as > .ome.tif should be working now, regardless of whether JFileChooser is > enabled or not. > > Note that there is still a known issue if overwriting multi-dot files > (like .ome.tif) with JFileChooser enabled[1]. > > Thanks again for your help identifying these issues! > > Best, > Mark > > [1] https://github.com/imagej/imagej-legacy/issues/102 > > > On Wed, Jan 21, 2015 at 6:24 PM, Hadrien Mary <hadrien.m...@gmail.com> > wrote: > >> Ok thanks. However even if I enable JFileChoose I still have an error >> which prevent me to save the file. See below. >> >> ------------------------------------------ >> (Fiji Is Just) ImageJ 2.0.0-rc-22/1.49m; Java 1.7.0_65 [64-bit]; Linux >> 3.13.0-44-generic; 80MB of 4362MB (1%) >> >> java.lang.RuntimeException: java.util.concurrent.ExecutionException: >> java.lang.IllegalArgumentException >> at >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:256) >> at >> net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:160) >> at ij.IJ.runPlugIn(IJ.java) >> at ij.Executer.runCommand(Executer.java:131) >> at ij.Executer.run(Executer.java:64) >> at java.lang.Thread.run(Thread.java:745) >> Caused by: java.util.concurrent.ExecutionException: >> java.lang.IllegalArgumentException >> at java.util.concurrent.FutureTask.report(FutureTask.java:122) >> at java.util.concurrent.FutureTask.get(FutureTask.java:188) >> at >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:252) >> ... 5 more >> Caused by: java.lang.IllegalArgumentException >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> at java.lang.reflect.Method.invoke(Method.java:606) >> at org.scijava.util.ReflectedUniverse.exec(ReflectedUniverse.java:314) >> at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:327) >> at net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:310) >> at net.imagej.plugins.commands.io.SaveAsImage.run(SaveAsImage.java:101) >> at org.scijava.command.CommandModule.run(CommandModule.java:201) >> at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167) >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126) >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65) >> at >> org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164) >> at java.util.concurrent.FutureTask.run(FutureTask.java:262) >> at >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) >> at >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) >> ... 1 more >> ------------------------------------------- >> >> I can't tell if it's related or another bug... >> >> -- >> Hadrien Mary >> >> Ph.D student in Biology >> Tournier-Gachet Team >> CNRS - LBCMCP - UMR 5088 >> >> Université de Toulouse - Bât. 4R3B1 >> 118, route de Narbonne - 31062 Toulouse >> >> >> On Wed, Jan 21, 2015 at 8:04 PM, Mark Hiner <hi...@wisc.edu> wrote: >> > Hi Hadrien, >> > >> > Thanks for reporting this. I finally tracked it down when working on >> > updating File > Export > Image... and File > Import > Image... to use >> the >> > fixes to OME-TIFF writing[1]. >> > >> > The issue has to do with whether or not the JFileChooser is >> enabled[2]. A >> > temporary workaround should be just to enable the use of the >> JFileChooser. >> > I'm hoping to have an actual fix soon though. >> > >> > Thanks again! >> > - Mark >> > >> > [1] http://imagej.net/pipermail/imagej-devel/2015-January/002407.html >> > [2] https://github.com/imagej/imagej-legacy/issues/101 >> > >> > On Wed, Jan 14, 2015 at 12:57 PM, Hadrien Mary <hadrien.m...@gmail.com> >> > wrote: >> >> >> >> Hi, >> >> >> >> I'd like to report a bug I noticed some time ago. >> >> >> >> I have an error when I try to save an OME Tiff file with File > Export >> >> > Image (to save it as an OME Tiff format). Note that it works well >> >> when the saved image is not an OME Tiff file. >> >> >> >> The bug is weird. >> >> >> >> First when I click File > Export > Image, gtk file manager open to ask >> >> where I want to save the file. The default filename is test.ometif >> >> (instead of test.ome.tif, current filename). I change the filename to >> >> be test.ome.tif (same bug when I don't change it) and when I click >> >> "save", I have this message : >> >> >> >> ------------------------------------ >> >> (Fiji Is Just) ImageJ 2.0.0-rc-21/1.49m; Java 1.7.0_65 [64-bit]; Linux >> >> 3.13.0-44-generic; 80MB of 3600MB (2%) >> >> >> >> java.lang.RuntimeException: java.util.concurrent.ExecutionException: >> >> java.lang.IllegalArgumentException >> >> at >> >> >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:256) >> >> at >> >> >> net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:160) >> >> at ij.IJ.runPlugIn(IJ.java) >> >> at ij.Executer.runCommand(Executer.java:131) >> >> at ij.Executer.run(Executer.java:64) >> >> at java.lang.Thread.run(Thread.java:745) >> >> Caused by: java.util.concurrent.ExecutionException: >> >> java.lang.IllegalArgumentException >> >> at java.util.concurrent.FutureTask.report(FutureTask.java:122) >> >> at java.util.concurrent.FutureTask.get(FutureTask.java:188) >> >> at >> >> >> net.imagej.legacy.DefaultLegacyService.runLegacyCompatibleCommand(DefaultLegacyService.java:252) >> >> ... 5 more >> >> Caused by: java.lang.IllegalArgumentException >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> >> at >> >> >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) >> >> at >> >> >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) >> >> at java.lang.reflect.Method.invoke(Method.java:606) >> >> at org.scijava.util.ReflectedUniverse.exec(ReflectedUniverse.java:314) >> >> at >> net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:327) >> >> at >> net.imagej.DefaultDatasetService.save(DefaultDatasetService.java:310) >> >> at net.imagej.plugins.commands.io.SaveAsImage.run(SaveAsImage.java:101) >> >> at org.scijava.command.CommandModule.run(CommandModule.java:201) >> >> at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167) >> >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126) >> >> at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65) >> >> at >> >> >> org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164) >> >> at java.util.concurrent.FutureTask.run(FutureTask.java:262) >> >> at >> >> >> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) >> >> at >> >> >> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) >> >> ... 1 more >> >> ------------------------------------ >> >> >> >> I currently use BF exporter function which is working well for my >> >> daily use. So don't rush on this. >> >> >> >> Thank you >> >> >> >> -- >> >> Hadrien Mary >> >> >> >> Ph.D student in Biology >> >> Tournier-Gachet Team >> >> CNRS - LBCMCP - UMR 5088 >> >> >> >> Université de Toulouse - Bât. 4R3B1 >> >> 118, route de Narbonne - 31062 Toulouse >> >> >> >> _______________________________________________ >> >> ImageJ-devel mailing list >> >> ImageJ-devel@imagej.net >> >> http://imagej.net/mailman/listinfo/imagej-devel >> > >> > >> > >
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