Matt, SimpleITK's super build passes CMAKE variable with the prefix "ITK_" to the ITK external project so customizing the ITK in the superbuild is easy. Here is the build script for the system build for the dashboard:
http://open.cdash.org/viewNotes.php?buildid=3322976 Brad On May 9, 2014, at 12:33 AM, Matt McCormick <[email protected]> wrote: > Yes [1], but it looks like ITK was not configured correctly? I will > try turning on the Review module... > > [1] http://open.cdash.org/buildSummary.php?buildid=3320996 > > On Thu, May 8, 2014 at 9:14 AM, Bradley Lowekamp <[email protected]> > wrote: >> Great, >> >> Hopefully it's finished by now :) >> >> Brad >> >> On May 7, 2014, at 5:46 PM, Matt McCormick <[email protected]> >> wrote: >> >>> Thanks, Brad. >>> >>> Debug build with those packages on Ubuntu 12.04: >>> >>> http://open.cdash.org/buildSummary.php?buildid=3320987 >>> >>> Starting SimpleITK Debug build... >>> >>> On Wed, May 7, 2014 at 1:39 PM, Bradley Lowekamp <[email protected]> >>> wrote: >>>> Matt on Ubuntu 12 I have the following installed: >>>> >>>> libhdf5-serial-1.8.4 install >>>> libhdf5-serial-dev install >>>> >>>> And on RHEL I have: >>>> >>>> hdf5-devel-1.8.5.patch1-7.el6.x86_64 >>>> hdf5-1.8.5.patch1-7.el6.x86_64 >>>> >>>> Brad >>>> >>>> On May 7, 2014, at 1:31 PM, Matt McCormick <[email protected]> >>>> wrote: >>>> >>>>> Hi Brad, >>>>> >>>>> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages: >>>>> >>>>> libhdf5-lam-dev >>>>> libhdf5-mpi-dev >>>>> libhdf5-mpich-dev >>>>> libhdf5-openmpi-dev >>>>> libhdf5-serial-dev >>>>> >>>>> Which one are you using? >>>>> >>>>> Thanks, >>>>> Matt >>>>> >>>>> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick >>>>> <[email protected]> wrote: >>>>>> Hi Brad, >>>>>> >>>>>> It looks like our code coverage for the HDF TransformIO is pretty good >>>>>> [1], but I do not see a dashboard submission for those platforms that >>>>>> use a system HDF5. I will set one up on faraway.kitware and try to >>>>>> reproduce the SimpleITK test failure. >>>>>> >>>>>> Thanks, >>>>>> Matt >>>>>> >>>>>> [1] >>>>>> http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html >>>>>> >>>>>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp >>>>>> <[email protected]> wrote: >>>>>>> Hello, >>>>>>> >>>>>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are >>>>>>> failing when using ITK built with system HDF5. Specifically with RHEL5 >>>>>>> and Ubuntu 12.04. I believe this is a critical issue as it's how ITK is >>>>>>> being built for Linux distributions. >>>>>>> >>>>>>> Looking through my ITK nightly build testing directory I didn't see any >>>>>>> hdf5 files which leads me to believe this IO transform format may not >>>>>>> be well tested. >>>>>>> >>>>>>> I would greatly appreciate some assistance on this issue. >>>>>>> >>>>>>> Here is my related SimpleITK issue. >>>>>>> https://issues.itk.org/jira/browse/SIMPLEITK-535 >>>>>>> >>>>>>> Thanks, >>>>>>> Brad >>>>>>> >>>> >> _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://www.itk.org/mailman/listinfo/insight-developers
