Matt, Have you had a change to look into this issue further?
Thanks, Brad On May 9, 2014, at 8:14 AM, Bradley Lowekamp <[email protected]> wrote: > Matt, > > SimpleITK's super build passes CMAKE variable with the prefix "ITK_" to the > ITK external project so customizing the ITK in the superbuild is easy. Here > is the build script for the system build for the dashboard: > > http://open.cdash.org/viewNotes.php?buildid=3322976 > > Brad > > On May 9, 2014, at 12:33 AM, Matt McCormick <[email protected]> > wrote: > >> Yes [1], but it looks like ITK was not configured correctly? I will >> try turning on the Review module... >> >> [1] http://open.cdash.org/buildSummary.php?buildid=3320996 >> >> On Thu, May 8, 2014 at 9:14 AM, Bradley Lowekamp <[email protected]> >> wrote: >>> Great, >>> >>> Hopefully it's finished by now :) >>> >>> Brad >>> >>> On May 7, 2014, at 5:46 PM, Matt McCormick <[email protected]> >>> wrote: >>> >>>> Thanks, Brad. >>>> >>>> Debug build with those packages on Ubuntu 12.04: >>>> >>>> http://open.cdash.org/buildSummary.php?buildid=3320987 >>>> >>>> Starting SimpleITK Debug build... >>>> >>>> On Wed, May 7, 2014 at 1:39 PM, Bradley Lowekamp <[email protected]> >>>> wrote: >>>>> Matt on Ubuntu 12 I have the following installed: >>>>> >>>>> libhdf5-serial-1.8.4 install >>>>> libhdf5-serial-dev install >>>>> >>>>> And on RHEL I have: >>>>> >>>>> hdf5-devel-1.8.5.patch1-7.el6.x86_64 >>>>> hdf5-1.8.5.patch1-7.el6.x86_64 >>>>> >>>>> Brad >>>>> >>>>> On May 7, 2014, at 1:31 PM, Matt McCormick <[email protected]> >>>>> wrote: >>>>> >>>>>> Hi Brad, >>>>>> >>>>>> On Ubuntu 12.04, there appears to be a number of HDF5 "-dev" packages: >>>>>> >>>>>> libhdf5-lam-dev >>>>>> libhdf5-mpi-dev >>>>>> libhdf5-mpich-dev >>>>>> libhdf5-openmpi-dev >>>>>> libhdf5-serial-dev >>>>>> >>>>>> Which one are you using? >>>>>> >>>>>> Thanks, >>>>>> Matt >>>>>> >>>>>> On Wed, May 7, 2014 at 1:23 PM, Matt McCormick >>>>>> <[email protected]> wrote: >>>>>>> Hi Brad, >>>>>>> >>>>>>> It looks like our code coverage for the HDF TransformIO is pretty good >>>>>>> [1], but I do not see a dashboard submission for those platforms that >>>>>>> use a system HDF5. I will set one up on faraway.kitware and try to >>>>>>> reproduce the SimpleITK test failure. >>>>>>> >>>>>>> Thanks, >>>>>>> Matt >>>>>>> >>>>>>> [1] >>>>>>> http://lorensen.github.io/VTKCodeCoverage/ITK/IO/TransformHDF5/src/index.html >>>>>>> >>>>>>> On Wed, May 7, 2014 at 8:59 AM, Bradley Lowekamp >>>>>>> <[email protected]> wrote: >>>>>>>> Hello, >>>>>>>> >>>>>>>> I wrote some SimpleITK tests to write out HDF5 transforms. They are >>>>>>>> failing when using ITK built with system HDF5. Specifically with RHEL5 >>>>>>>> and Ubuntu 12.04. I believe this is a critical issue as it's how ITK >>>>>>>> is being built for Linux distributions. >>>>>>>> >>>>>>>> Looking through my ITK nightly build testing directory I didn't see >>>>>>>> any hdf5 files which leads me to believe this IO transform format may >>>>>>>> not be well tested. >>>>>>>> >>>>>>>> I would greatly appreciate some assistance on this issue. >>>>>>>> >>>>>>>> Here is my related SimpleITK issue. >>>>>>>> https://issues.itk.org/jira/browse/SIMPLEITK-535 >>>>>>>> >>>>>>>> Thanks, >>>>>>>> Brad >>>>>>>> >>>>> >>> > > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at > http://www.kitware.com/opensource/opensource.html > > Kitware offers ITK Training Courses, for more information visit: > http://kitware.com/products/protraining.php > > Please keep messages on-topic and check the ITK FAQ at: > http://www.itk.org/Wiki/ITK_FAQ > > Follow this link to subscribe/unsubscribe: > http://www.itk.org/mailman/listinfo/insight-developers _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/insight-developers
