On behalf of the Insight Toolkit community, we are proud to announce that ITK 4.11 release candidate 1 has been tagged and is available for testing! Please take this opportunity to test the new features in the release candidate.
To obtain the source code, git clone https://itk.org/ITK.git cd ITK git checkout -q --detach v4.11rc01 For more details, please see the Git documentation [1]. A few selected highlights for this release: - Remote Modules were added to: perturb mesh vertices with additive gaussian noise, accurately benchmark computational performance, perform principal components analysis of scalar, vector, and mesh vertex data, create a run-length encoded memory compression scheme for itk::Image, run N-D morphological contour interpolation, interpolate multi-label images, iterate over multiple images simultaneously, and compute inverse displacement fields. - NumPy bridge support is now enabled by default with NumPy array views of multi-component images and VNL vectors and matrices. - Internal HDF5 was updated to the latest upstream version along with a number of other third-party libraries. This release introduces a new template class export specification macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated classes to address failing dynamic_cast's and exception catching across binaries on Mac OSX. Bugs were addressed and improvements were made to how the pseudo-random number generator is used. Tests that rely on the random number generator should explicitly set the global seed at start: itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( 121212 ); To improve randomness, new instances of the generator start from a different seed; some minor differences in the output of algorithms that uses the generator, like mutual information metrics, should be expected. Please test the release candidate and share your experiences on the mailing list, issue tracker, and Gerrit Code Review. An Experimental build, which demonstrates how the test suite performs on your local build system, can be submitted to the dashboard [2] with: mkdir ../ITK-build cd ../ITK-build cmake ../ITK ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit Visual Studio builds must also add “-C Release” to the ctest command. Notify the mailing list if there are any unexpected failures. Testing your own applications against the RC is also appreciated. Congratulations to the 31 contributors to this release. We would especially like to recognize the new contributors: Hastings Greer, Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss Jallais. The 4.11.0 final release is scheduled for January 23rd. [1] http://www.itk.org/Wiki/ITK/Git [2] http://open.cdash.org/index.php?project=Insight New Features ------------ * Wrapping Improvements - Python GetArrayFromImage() and GetImageFromArray() from ITKBridgeNumPy are directly accessible from the Python itk namespace. - The itk package loads much faster: individual modules are loaded only when required. - Conversion of ITK images from and to NumPy array using Bridge NumPy supports RGB, RGBA, and Vector images. - VNL vectors and VNL matrices can be converted from and to NumPy objects with respectively the new couple of functions GetArrayFromVnlVector()/GetVnlVectorFromArray() and GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() - The global timestamp is used across all ITK Python modules when built statically - Wrap additional classes such as KernelFunctionBase - itk_python_add_test CMake function added for Python script testing in ITK modules * New Remote Modules - DVMeshNoise - Perturbing mesh vertices with additive gaussian noise - http://hdl.handle.net/10380/3567 - PerformanceBenchmarking - Accurate benchmarking of computational performance - http://hdl.handle.net/10380/3557 - PrincipalComponentsAnalysis - Principal components analysis of scalar, vector, and mesh vertex data - http://hdl.handle.net/10380/3386 - RLEImage - Run-length encoded memory compression scheme for itk::Image - http://hdl.handle.net/10380/3562 - MorphologicalContourInterpolation - N-D morphological contour interpolation - http://hdl.handle.net/10380/3563 - GenericLabelInterpolator - A generic interpolator for multi-label images - http://hdl.handle.net/10380/3506 - MultipleImageIterator - Iterate over multiple images simultaneously - http://hdl.handle.net/10380/3455 - FixedPointInverseDisplacementField - Computes inverse displacement field - http://hdl.handle.net/10380/3222 * Core Improvements - New ITK_TEMPLATE_EXPORT for templated classes resolves cross-binary dynamic_cast on Mac OSX - New MersenneTwisterRandomVariateGenerator instances are initialized with different seeds - Use compiler feature detection in CMake for C++11 features, etc. - New CMake macro itk_module_add_library for creating libraries in ITK modules - Improved support for ccache and distcc with CMAKE_<LANG>_COMPILER_LAUNCHER (CMake >=3.4 required) - Support for .sha512 ExternalData content links - GitHub Pages and data.kitware.com ExternalData repositories added - GPGPU system support for C++11 - Support of new compilers: Visual Studio 15 and XCode 8.2.1 (clang-800.0.42.1) * Filtering Improvements - HessianToObjectnessMeasure moved out of the ITKReview module - New UnsharpMaskImageFilter for image edge enhancement * IO Improvements - TransformFactory class has been moved to a separate module - Spline order added to BSplineTransform identifier - Improved NIFTI orientation support * Documentation Improvements - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples * Third Party Library Updates - pygccxml updated to v1.8.0 - VNL updated to latest upstream (2016.07.06) - SWIG updated to v3.0.11 - KWSys updated to latest upstream (2016.11.21) - HDF5 updated to v1.8.17 - SCIFIO updated to latest upstream (2016.12.01) - DCMTK updated to 3.6.1_20121012 - CastXML to latest upstream (2016.01.28) * Improved Code Coverage -- we are at 85.44%! - Jon Haitz-Legarreta's extensive code coverage improvements - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ * *Lots* of important bug fixes * And much more! See details in the log below. Changes from v4.10.0 to v4.11rc01 ------------------------------------------------ Bill Lorensen (4): COMP: Restore support for clang 3.0 compiler COMP: Consistent use of ModifiedTimeType ENH: Bump WikiExamples remote module version ENH: Bump WikiExamples version Bradley Lowekamp (57): ENH: Add registered TrasformIO's to exception ENH: Use template or constant for loop stop condition ENH: Updating SWIG version to 3.0.9 COMP: Address VS9 ambiguous std::abs call in Haung calculator COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 BUG: Fix segfault if ~CleanUpObjectFactory called multiple times BUG: Address itkHDF5ImageIO test failures for mingw64 BUG: demonstrate dynamic_cast failure when reading transforms BUG: Address itkHDF5ImageIO test failures for mingw64 ENH: Updating SWIG version to 3.0.10 ENH: Enable CMP0063 New behavior COMP: Enable hidden visibility property with vxl static libraries COMP: Enable hidden visibility property with HDF5 static libraries COMP: Enable hidden visibility property with HDF5 static libraries BUG: Match Add2 function to AddImageFilter documentation ENH: Improve support for std::complex with PowImageFilter ENH: Explicitly mark required files for dependent tests COMP: Bypass XCode 7.3,8 internal compilation error COMP: Address CMake configuration error with itkJPEG2000Test03 property BUG: Correct test's REQUIRED_FILES to only the input. ENH: move HessianToObjectnessMeasure filter out of Review ENH: Separate TransformFactory class into separate module DOC: Add links between similar label to rgb filters ENH: Separate data from function calls COMP: Fix changed Graft method ENH: Reduce template dependencies on CalculateRotationMatrix ENH: Add Functor Accessors to LabelMapToRGB filter BUG: Enable VirtualDomain and FixedTransform in RegMethv4 BUG: Use BSpline Order 3 for 2D in transform factory. ENH: Add spline order to BSplineTransform's string id ENH: Adding initial CircleCi configuration file COMP: Fix float to unsigned integer conversion warnings BUG: Include installed modules in ITK_MODULES_ENABLED COMP: Address CMake error that ITKGPUCommon is not in export COMP: Address wrong library types with VS and shared libraries BUG: Ensure CreateImageIO is concurrent thread safe ENH: Mark HDF5 CMake options as internal COMP: Add template export declaration for ParametricPath COMP: Correct TEMPLATE_EXPLICIT definition in Path module ENH: Factor out common code in the TrasformFactoryBase registration ENH: Add CMake variable for max transform dimension, defaults 4 ENH: Create CMake module to check for private RTTI compatibility ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT BUG: Add explicit instantiate for ObjectToObjectOptimizerBase COMP: Use add_definitions for CMake 2.8.9 compatibility COMP: Add warning suppression for distcc warning ENH: Explicitly instantiate the optimizer base over float BUG: Use IsLinear to check if transform is "affine" ENH: Remove unneeded includes of random iterator header ENH: Improve thread-safety for Generator, and unique New sequence ENH: Do not use global random generator BUG: Update v3 registration metrics to use local seed ENH: Prefer setting local seed over global in tests. ENH: Update SWIG to latest 3.0.11 release BUG: relax testing parameters for v3 translation registration BUG: Restore baseline for debug registration Caspar Goch (2): BUG: Use printable type for RGBA pixel ostream for ITK-3501 STYLE: Remove extra space for ITK-3501 Christina Rossmanith (1): DOC: Added more details to the class Doxygen documentation. Davis Vigneault (2): COMP: VCL_DEFINE_SPECIALIZATION not defined ENH: Add remote module DVMeshNoise Dženan Zukić (27): BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) ENH: Adding MultipleImageIterator as a remote module COMP: enables TBB 4.4 back-end for VTK7's SMP COMP: enabling position independent code flag for FFTW ENH: adding configuration file for code reformatting tool clang-format ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 COMP: Fixing -fPIC flag passing with Ninja build system ENH: Adding RLEImage as a remote module ENH: Updating uncrustify configuration to current git version STYLE: better compliance with ITK style STYLE: A new option in uncrustify, updating the config file accordingly ENH: Adding MorphologicalContourInterpolation as a remote module ENH: improving documentation BUG: fixing buffer growing endlessly, as reported by Timothee Evain BUG: fixing buffer growing endlessly, as reported by Timothee Evain STYLE: default uncrustify configuration file is less aggressive COMP: Fixing warning COMP: VS15 compiler fix BUG: casting -9 to unsigned produced unwanted result BUG: Ensuring consistency between debug and release COMP: Updating LesionSizingToolkit after some recent compile fixes COMP: respect option METAIO_USE_NAMESPACE ENH: updating version of AnisotropicDiffusionLBR ENH: adding UnsharpMaskingImageFilter COMP: explicitly cast to output type BUG: double call to update would cause empty output image ENH: Updating RLEImage remote module. Change-log: Eugene Prilepin (4): ENH: Add the "ITK_USE_GPU" to ITK Config BUG: Fix API for set/get "LaplacianImageFilter" object ENH: Add support of images types with the 'CovariantVector' pixel type ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap Francois Budin (52): ENH: Adding GetArrayFromImage in python itk namespace ENH: Adding GetImageFromArray in python itk namespace ENH: *_WRAP_* variable per external module BUG: ImportImageFilter not responsible of memory management ENH: New remote module GenericLabelInterpolator DOC: SetNumberOfOutputs had wrong comment BUG: lazyAttributes dictionary keys could be over-ridden BUG: lazyAttributes dictionary keys could be over-ridden BUG: Fix recent update of HDF5 (1.8.17) ENH: Update SCIFIO to latest version on 08/23/2016 ENH: Addition of the remote module FixedPointInverseDisplacementField ENH: Update SCIFIO to latest version on 08/29/2016 BUG: Path to commit was relative instead of absolute ENH: Path to SetupForDevelopment is relative, not absolute BUG: LSMImageIO write function was not checking image dimension BUG: LSMImageIO was not checking correctly image dimension BUG: Missing associated test data BUG: Missing associated test data ENH: Bump CMakeLists.txt version to 4.10.1. BUG: Quotes are not escaped in configured cmake file ENH: Improving API of Graft() in itk::Image ENH: Updating ITKGenericLabelInterpolator remote module ENH: Update ITKIOTransformDCMTK remote module BUG: Factory registration should depend on ITK_BUILD_SHARED COMP: Updating DCMTK compilation for Ninja ENH: Update version of DCMTK to 3.6.1_20121012 ENH: Update SCIFIO to latest version on 10/25/2016 BUG: Swig and PCRE do not support space in installation paths BUG: exit() call from within piped commands was not exiting the script BUG: Typo in folder creation command ENH: Only display message for transform registered multiple times in debug ENH: Image spacing must be positive BUG: Supported extensions by PNG IO were not added in constructor. DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. ENH: Update SCIFIO to lastest (2016.12.01) ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium COMP: Remove compilation warnings ENH: Improved support of ccache and distcc BUG: GPUImage regression due to API change. ENH: Update Bridge Numpy (2016.12.05) ENH: Update VariationalRegistration to remove warnings during compilation ENH: FindPythonLibs does not support both debug and release python libraries ENH: Update VariationalRegistration BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper BUG: Missing ITK_TEMPLATE_EXPORT in templated class BUG: Remove linkage warnings on MacOS BUG: HDF5 CMake installation directory variable had not been updated BUG: Missing include header in AnisotropicDiffusionBLR remote module hxx files COMP: Silencing unused variable warning in itkTimeStamp STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt COMP: OS*Barrier functions are deprecated on MacOS 10.12 GCC-XML Upstream (1): ENH: pygccxml v1.8.0 (reduced) Gert Wollny (1): BUG: Relax vnl_complex floating point comparisons for i386 Gilles Filippini (1): BUG: Use NATIVE_HBOOL for encoding HDF5 types. HDF Group (1): ENH: hdf5 1.8.17-r30218 (reduced) Hans Johnson (23): COMP: Use cmake WriteCompilerDetectionHeader ENH: Use itk_compiler_detection versions COMP: Need ITK_NOEXCEPT_OR_THROW macro. COMP: Provide consistent granular C++11 support STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT STYLE: Prefer to use consistent definitions COMP: Improve robustness of identifying the compiler standard used BUG: try_compile for AlignAs were always failing STYLE: Provide a well documented macro for repeated code STYLE: Delete functions in consistent way COMP: GPU baseclass ivars need to be protected COMP: Remove unnecessary circular dependancy COMP: Add long long usage for HDF5 COMP: Add long long usage for HDF5 STYLE: Prefer static small array to dynamic array BUG: Confusing interface for FFTW wisdom files STYLE: Output dimension from OutputImageType STYLE: Code review style cleanups STYLE: Prefer to use ITK AssertOrThrow macros ENH: Add OverrideBoundaryCondition logic ENH: Provide mechanism for enhanced NIFTI support BUG: Use NIFTI sform/qform conventions correctly ENH: Remove ambiguity about sform/qform Hastings Greer (8): BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically BUG: make itkTriangleHelper instantiable to ease wrapping BUG: remove lsqr because of license issues ITK 1160 BUG: make itkTriangleHelper instantiable to ease wrapping BUG: initialize X to zero in lsmr Solve BUG: Labled Point Set Registration: test multiple labels BUG: Fix python wrapping of Cuberille remote module BUG: Add test demonstrating Python global timestamp issue Jean-Christophe Fillion-Robin (5): STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 STYLE: MeshIO: Remove unused include from headers. See #3393 Johan Andruejol (3): ENH: Add missing itkKernelFunctionBase wrapping ENH: Add PrincipalComponentsAnalysis remote module COMP: Override cannot be used with inline Jon Haitz Legarreta (216): ENH: Improve itkFlatStructutingElement coverage. ENH: Improve itkPathToImageFilter class coverage. ENH: Improve itkIsolatedWatershedImageFilter coverage. ENH: Improve itkLogSigmoidTransferFunction coverage. STYLE: Improve itkBSplineTransform doc style. ENH: Improve GaborKernelFunctionCoverage. PERF: Remove duplicate itkMath include STYLE: Move the PrintSelf method to the end STYLE: Improve the itkScalarToRGBColormapImageFilter style. STYLE: Delete duplicate method documentation STYLE: Remove method documentation from implementation file STYLE: Improve GACLevelSet classes' style STYLE: Improve test style ENH: Improve itkGaussianDerivativeImageFilter coverage. ENH: Improve the itkScalarToRGBColormapImageFilter coverage STYLE: Improve itkScalarToRGBColormap test style ENH: Improve GACLSImageFilter classes' coverage STYLE: Improve comment style in GACLS tests ENH: Improve itkImportImageFilter coverage ENH: Improve itkVideoFileReader coverage ENH: Improve itkVideoFileWriter coverage STYLE: Improve the itkVideoFileWriter style. STYLE: Imrpove itkVideoFileReader style. ENH: Improve the itkBSplineControlPointImageFunction coverage STYLE: Improve the itkIntensityWindowingImageFilter style STYLE: Improve the itkIntensityWindowingImageFilter test style ENH: Improve ImageToSpatialObjectRegistrationMethod coverage STYLE: Improve test style ENH: Improve MaskNeighborhoodOperatorImageFilter coverage ENH: Improve itkMeshFileWriter coverage ENH: Improve RescaleIntensityImageFilter coverage. ENH: Improve itkClampImageFilter coverage. BUG: Fix ivar type casting in PrintSelf. STYLE: Improve MRIBiasFieldCorrectionFilter style. ENH: Improve MRIBiasFieldCorrectionFilter coverage. ENH: Improve itkIntensityWindowingImageFilter coverage BUG: Fix Run-time type information in CSV module classes. ENH: Improve the itkHistogram class code coverage. DOC: Fix documentation typo. STYLE: Improve the ImproveRescaleIntensityImageFilter style. PERF: Make the itkVideoFileReader ivars private PERF: Make itkVideoFileWriter ivars private ENH: Improve coverage for itk::OrientImageFilter. STYLE: Improve itk::OrientImageFilter class style. ENH: Improve itkCSVNumericObjectFileWriter coverage. ENH: Add missing standard class typdefs. ENH: Improve itkVoronoiSegmentationImageFilter coverage. ENH: Improve itkVoronoiSegmentationImageFilter style. STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. ENH: Improve coverage for itkMalahanobisDistanceThreshold. ENH: Improve itk::MinimumMaximumImageCalculator coverage. ENH: Improve itkMinimumMaximumImageCalculator style. BUG: Fix type mismatch in test. STYLE: Improve itkPolylineMaskImagefilter style. ENH: Improve itkPolylineMaskImageFilter coverage. ENH: Improve itkFileListVideoStyle. ENH: Improve itkLandmarkBasedTransformInitializer coverage. ENH: Add baseline image to itkPolylineMaskImageFilter test. ENH: Improve coverage for itkBSplineTransformInitializer. STYLE: Improve itkBSplineTransformInitializer doc style. ENH: Enhance itkBSplineTransformInitializer implementation. DOC: Fix typo in method documentation. ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. STYLE: Improve the itkSimpleContourExtractorImageFilter style. ENH: Exercise the class' Get methods. ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. ENH: Improve style for itkThresholdLabelerImageFilter. ENH: Improve itkThresholdLabelerImageFilter coverage. ENH: Get internal ImageIO via a const macro. ENH: Improve the itkSimpleContourExtractorImageFilter coverage. STYLE: Improve the itkMetaArray class style. ENH: Improve MetaArrayReader/Writer coverages. ENH: Improve the itkCovarianceImageFunction style. STYLE: Improve itkVoronoiDiagram2DGenerator style. ENH: Improve VoronoiDiagram2DGenerator coverage. STYLE: Improve the itkBayesianClassifierImageFilter style. STYLE: Improve the itkMetaArrayWriter style. ENH: Improve itkCovarianteImageFunction coverage. COMP: Fix signed/unsigned int comparison warning. DOC: Improve itkGrayscaleDilateImageFilter documentation. DOC: Improve documentation for itkGrayscaleErodeImageFilter. DOC: Improve ConfigureHistogram method documentation. STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. BUG: Fix Superclass name in RTTI. STYLE: Improve itkGaussianInterpolateImageFunction style. ENH: Improve coverage for itkGaussianInterpolateImageFunction. ENH: Improve itkBayesianClassifierImageFilter coverage. ENH: Add itkBSplineControlPointImageFilter RTTI. STYLE: Improve itkBSplinecontrolPointImageFilter style. ENH: Improve itkBSplineControlPointImageFilter coverage. ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. STYLE: Improve the class implementation file style. STYLE: Improve the itkResampleImageFilter style. DOC: Fix typo in GetMTime method doc. STYLE: Remove out-of-body implementation doc ENH: Improve itkResampleImageFilter coverage. ENH: Improve itkAbsImageAdaptor and Filter coverage. BUG: Fix itkLSMImageIO class' Superclass name. ENH: Improve the itkInterpolateImagePointsFilter coverage. ENH: Improve itkPowImageFilter coverage. BUG: Fix ConvolutionImageFilter RTTI. STYLE: Use initialization lists. STYLE: Improve BinaryFunctorImageFilter style. ENH: Improve itkMinimumImageFilter code coverage. BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. ENH: Improve MaximumImageFilter coverage. BUG: Fix conversion to PixelType conversion. COMP: Fix double to unsigned char conversion warning. ENH: Improve coverage for itkNormalizeToConstantImageFilter. BUG: Fix itkSquaredDifferenceErrorFunction RTTI. ENH: Improve itkMeanImageFunctionCoverage. ENH: Improve itkSquareImageFilter coverage. STYLE: Improve the itkSquaredDifferenceErrorFunction style. STYLE: Enhance style for itkNormalizeToConstantImageFilter. STYLE: Improve itkMeanImageFunction style. ENH: Remove unnecesary call to filter print. ENH: Improve itkRegionOfInterestImageFilter coverage. STYLE: Improve itkRegionOfInterestImageFilter style. STYLE: Improve itkPasteImageFilter style. STYLE: Improve itkJoinSeriesImageFilter style. BUG: Fix itkPadLabelMapFilter RTTI Superclass. COMP: Address std::cout.precision conversion warning. ENH: Improve itkBayesianClassifiertImageFilter coverage. ENH: Improve itkPadLabelMapFilter coverage. ENH: Improve itkJoinSeriesImageFilter coverage. ENH: Improve the itkPasteImageFilter coverage. ENH: Improve MeanImageFilter coverage. COMP: Address std::cout.precision conversion warning. ENH: Improve TernaryMagnitudeImageFilter coverage. ENH: Improve FFTConvolutionImageFilter coverage. DOC: Fix class documentation in ternary magnitude filters. ENH: Improve ConstrainedValueDifferenceImageFilter coverage. ENH: Improve AndImageFilter coverage. ENH: Add baseline test to itkTernaryMagnitudeImageFilter. ENH: Use MD5 comparison framework in baseline test. ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. STYLE: Improve the itkVectorRescaleIntensityImageFilter style. ENH: Print missing ivar in filter PrintSelf method. ENH: Improve itkComplexToImaginaryFilter coverage. ENH: Improve itkComplexToPhaseImageFilter coverage. ENH: Improve itkComplexToModulusImageFilter coverage. ENH: Improve itkComplexToRealImageFilter coverage. ENH: Improve itkVectorResampleImageFilter coverage. ENH: Add GetTransform method. ENH: Improve itkConstrainedValueAdditionImageFilter coverage. ENH: Improve itkModulusImageFilter coverage. ENH: Improve itkLog10ImageFilter coverage. ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. ENH: Improve itkLogImageFilter coverage. ENH: Improve itkInvertIntensityImageFilter coverage. STYLE: Improve itkInvertIntensityImageFilter style. DOC: Add missing doc to itkInvertIntensityImageFilter. STYLE: Improve itkIntensityWindowingImageFilter style. STYLE: Use initialization lists. ENH: Improve itkIntensityWindowingImageFilter coverage. ENH: Improve itkNaryMaximumImageFilter coverage. COMP: Fix std::precision type casting warning. ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. ENH: Remove SmartPointers being explicitly initialized to null. STYLE: Improve the itkPointSetToImageRegistrationMethod style. ENH: Improve itkPointSetToImageRegistration coverage. STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. STYLE: Improve itkVectorResampleImageFilter style. STYLE: Improve the itkAntiAliasBinaryImageFilter style. ENH: Improve trigonometric function filters' coverage. STYLE: Remove test names from std::out messages. ENH: Improve Boolean Algebra ImageFilters coverage. STYLE: Improve the EuclideanDistancePointMetric style. ENH: Improve itkSigmoidImageFilter coverage. STYLE: Improve itkCropImageFilter style. ENH: Improve itkCropImageFilter coverage. ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. ENH: Improve itkRescaleIntensityImageFilter coverage. ENH: Improve the itkMatrixSelectionImageFilter coverage. ENH: Improve itkTanImageFilter and Adaptor coverage. ENH: Increase itkSqrtImageFilter and Adaptor coverage. ENH: Increase itkTernaryOperatorImageFilter coverage. ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. STYLE: Improve itkScalarImagekmeansImageFilter style. STYLE: Conform to TEST_SET_GET_VALUE definition. BUG: Fix uninitialized variable due to dynamic analysis defect. BUG: Fix uninitialized variable defect reported by valgrind. ENH: Improve the itkPointSetToPointSetRegistrationTest. ENH: Improve the itkPointSetToImageRegistrationTest. ENH: Increas BinaryMagnitudeImageFilter coverage. STYLE: Remove test name from std output. ENH: Increase MagnitudeImageFilter coverage. BUG: Fix uninitialized variable defect reported by valgrind. BUG: Fix Superclass name in RTTI. STYLE: Improve itkFrustumSpatialFunction style. STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. BUG: Fix Superclass template argument list. STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. STYLE: Improve the itkCheckerBoardImageFilter class style. ENH: Improve the itk::LabelVotingImageFilter coverage. ENH: Improve itkCheckerBoardImageFilter coverage. STYLE: Improve itk::LabelVotingImageFilter style. STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. ENH: Add test for itk::FrustumSpatialFunction class. ENH: Improve itkConnectedThresholdImageFilter coverage. STYLE: Improve itkConnectedThresholdImageFilter style. BUG: Fix FrustumSpatialFunction internal precision conversion. COMP: Fix implicit conversion warning. STYLE: Improve itkThresholdImageFilter style. ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. BUG: Fix Superclass template argument list. ENH: Improve itkUnsharpMaskingImageFilter implementation. ENH: Improve the itkUnsharpMaskingImageFilter coverage. ENH: Fix UnsharpMaskingImageFilter test inconsistencies. BUG: Add missing itkTypeMacro. DOC: Document the member variables. BUG: Fix the itkImageSource RTTI class name, STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. STYLE: Improve itkLabelOverlapMeasurementImageFilter style. KWSys Robot (6): KWSys 2016-06-30 (96f06c8e) KWSys 2016-10-23 (b630d2f5) KWSys 2016-11-03 (37306a1c) KWSys 2016-11-08 (2b3e2b1c) KWSys 2016-11-09 (18c65411) KWSys 2016-11-21 (cb55cf5a) Maeliss Jallais (1): BUG: Add unsigned and signed short to the wrapping of vnl_matrix Matthew McCormick (85): PERF: Simplify HilbertPath numberOfPathVertices computation. BUG: CID 1355469 NNetClassifierTest4 unintended integer division. BUG: Update Cuberille Remote for version check fix. ENH: Bump ITK version to 4.11.0. BUG: Fix HDF5ImageIO type information. BUG: Fix H5File memory leak in HDF5ImageIO. DOC: Collect Francois Budin's contributions in .mailmap BUG: Limit WRAP_ITK_MODULES when building externally STYLE: Improvements to ResourceProbe report output. ENH: Add a useTabs argument to ResourceProbe::Report. ENH: Add standard error measure to the ResourceProbe ENH: Add itk_python_add_test function. BUG: Remove VNL file from subtree merge. COMP: Fix wrapping with a space in the Python include path BUG: Fix PermuteAxesImageFilter pipeline method visibility BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter BUG: ResampleImageFilter honor isInside output of the transform method COMP: Avoid recursive include of itkMath.h COMP: Fix VXL header installation locations BUG: ClampImageFilterTest for older GCC, InPlaceOn DOC: Add CONTRIBUTING.md file to the top level. COMP: Update VariationalRegistration to address Doxygen warnings BUG: Compiler detections file installed into ITK build tree location COMP: Do not use string(TIMESTAMP. COMP: Remove HDF5 -std=c99 for C++ files BUG: Do not build HDF5 static library with a shared build ENH: Add PerformanceBenchmarking Remote Module COMP: Remove duplicate wrappings for ResampleImageFilter BUG: Put Python test output files in the build tree BUG: Improve HDF5ImageIO::CloseDataSet name COMP: Use add_python_test PythonLazyLoadingImage COMP: Address missing override it itkFactoryTestLib.cxx BUG: Index,Size,Offset constructors present in Python with C++11 COMP: Address missing override it itkFactoryTestLib.cxx BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT ENH: Bump SetupForDevelopment version BUG: Add missing ZLib deflate support to HDF5 BUG: Address memory leak, remove NumPy build dep in BridgeNumPy COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include ITK_WRAP_IMAGE_DIMS BUG: RichardsonLucyDeconvolutionImageFilter with non-null input Image Origin BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed) BUG: Do not hard code CMake scripts in HDF5 COMP: Workaround Emscripten ITKCommon test build failure COMP: Do embed fancy HDF5 libsettings with Emscripten COMP: Add missing H5T_patch_vlen_file declaration ENH: Bump CastXML to 2016-10-11 master. COMP: Workaround Emscripten ITKCommon test build failure BUG: Swap CastXML hashes for Mac OSX and Windows ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 COMP: Fix VNL tests when cross-compiling ENH: ExternalData multi-algorithm support ENH: ExternalData support for data.kitware.com BUG: Install missing H5pubconf.h BUG: Use SpacePrecisionType in TileImageFilter BUG: Use internal ExternalData_Add_Target ENH: Run .sha512, .md5 simultaneous modification pre-commit check BUG: Correct CastXML Windows binary BUG: Support non-zero Index in LevelSetNeighborhoodExtractor ENH: Add ArchiveTestingDataOnGirder.py BUG: Correct AtanRegularizationHeavisideStepFunction derivative ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh BUG: Remove extra HessianToObjectness content links ENH: Wrap SpatialFunction float types with ITK_WRAP_float BUG: Bump PerformanceBenchmarking to 2016-11-04 BUG: itk_python_expression_add_test too many quotes. ENH: Wrap VectorImage with complex real pixel types ENH: Bump PerformanceBenchmarking to 2016-11-07 BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter ENH: Create itk_module_add_library macro BUG: Update computeCodeCoverageLocally.sh for KWStyle addition COMP: Install a newer version of CMake on CircleCI ENH: Use GitHub Pages as the first ExternalData resource ENH: Add tests to demonstrate OSX dynamic_cast failure BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. BUG: Enable program global timestamp BUG: Set random number seed in Mattes metric test BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON BUG: Set random number seed mutual information metric tests BUG: Wrap std::vector< itk.Point > BUG: Fix wrapping of LandmarkBasedTransformInitializer BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter DOC: Add Dženan Zukić to .mailmap Max Smolens (4): COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field BUG: CID-1355438 QuadEdgeTest1 resource leaks COMP: CID-1355472 MIRegistrationFunction unused value COMP: Fix link errors for VNL template instantiations on Windows Mayeul Chassagnard (7): BUG: Test added and error fixed in HDF5ImageIO ENH: Update add_library TO itk_module_add_library COMP: Set Policy CMP0023 target_link_libraries for Modules/ThirdParty/VNLI... BUG: Add ITK_TEMPLATE_EXPORT to template classes BUG: Fix errors linked to dyn_cast merge BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes BUG: dash3win7 dashboard build error unresolved external symbol Michka Popoff (3): ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 ENH: Update igenerator.py for pygccxml v1.8.0 COMP: Use pygccxml's public API for apply definitions Pierre Barbier de Reuille (2): COMP: Fix function naming error when using FFTWD COMP: Fix function naming error when using FFTWD Sean McBride (1): COMP: Bypass HDF5 bugs under TSan Simon Rit (2): COMP: remove C++11 compiler warning for CUDA compilations COMP: remove C++11 compiler warning for CUDA compilations Somesh Kashyap (2): BUG: Override TransformCategoryType for AzimuthElevationToCartesianTransform BUG: -Added test case for itkAzimuthElevationToCartesianTransform Sumedha Singla (1): ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module Taylor Braun-Jones (4): COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled COMP: Fix truncation from double to float warning DOC: Fix incorrect itkFactorylessNewMacro documentation COMP: Only include the headers for required OpenCV modules Thien Nguyen (1): PERF: SmapsFileParser unnecessary dynamic_cast VXL Maintainers (4): VNL 2016-05-15 (14f97ab4) VNL 2016-06-22 (23a93adb) VNL 2016-06-29 (d62a2d70) VNL 2016-07-06 (acfa62cc) Vladimir S. FONOV (1): COMP: Build against GCC 5.3.1 Zach Williamson (2): ENH: Update Remote Module Tags BUG: Fix Python Wrappings in C++11 Ziv Yaniv (1): BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. ----------------------------------------------------- Errors or omissions? Please fix them here: https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/insight-developers