Hello Brad, Good point. I added a comment in the release notes.
Thanks, Matt On Thu, Jan 12, 2017 at 11:19 AM, Lowekamp, Bradley (NIH/NLM/LHC) [C] <blowek...@mail.nih.gov> wrote: > Hello, > > An additional bug fix that may have impact on registration is this one: > https://github.com/InsightSoftwareConsortium/ITK/commit/99a7ac8f3ab88cdc508084e4921f0f4c9678468b > > The ITKv4 parameter estimators where using an incorrect algorithm for > “affine” or “linear” transforms. The previous incorrect algorithm used random > samples, which produced unstable parameter scales. Because of the change to > the wall clock initialized random generator, I have found that many > registrations were overly sensitive to these random estimated scale. The > correction to fixed corner based sampling should produce stable and > reproducible results moving forward. > > Brad > >> On Jan 9, 2017, at 8:08 PM, Matt McCormick <matt.mccorm...@kitware.com> >> wrote: >> >> On behalf of the Insight Toolkit community, we are proud to announce >> that ITK 4.11 release candidate 1 has been tagged and is available for >> testing! Please take this opportunity to test the new features in the >> release candidate. >> >> >> To obtain the source code, >> >> git clone https://itk.org/ITK.git >> cd ITK >> git checkout -q --detach v4.11rc01 >> >> For more details, please see the Git documentation [1]. >> >> >> A few selected highlights for this release: >> >> >> - Remote Modules were added to: perturb mesh vertices with additive >> gaussian noise, accurately benchmark computational performance, >> perform principal components analysis of scalar, vector, and mesh >> vertex data, create a run-length encoded memory compression scheme for >> itk::Image, run N-D morphological contour interpolation, interpolate >> multi-label images, iterate over multiple images simultaneously, and >> compute inverse displacement fields. >> - NumPy bridge support is now enabled by default with NumPy array >> views of multi-component images and VNL vectors and matrices. >> - Internal HDF5 was updated to the latest upstream version along >> with a number of other third-party libraries. >> >> >> This release introduces a new template class export specification >> macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated >> classes to address failing dynamic_cast's and exception catching >> across binaries on Mac OSX. >> >> Bugs were addressed and improvements were made to how the >> pseudo-random number generator is used. Tests that rely on the random >> number generator should explicitly set the global seed at start: >> >> >> itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed( >> 121212 ); >> >> To improve randomness, new instances of the generator start from a >> different seed; some minor differences in the output of algorithms >> that uses the generator, like mutual information metrics, should be >> expected. >> >> >> Please test the release candidate and share your experiences on the >> mailing list, issue tracker, and Gerrit Code Review. >> >> An Experimental build, which demonstrates how the test suite performs >> on your local build system, can be submitted to the dashboard [2] >> with: >> >> mkdir ../ITK-build >> cd ../ITK-build >> cmake ../ITK >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit >> >> Visual Studio builds must also add “-C Release” to the ctest command. >> >> Notify the mailing list if there are any unexpected failures. Testing >> your own applications against the RC is also appreciated. >> >> >> Congratulations to the 31 contributors to this release. We would >> especially like to recognize the new contributors: Hastings Greer, >> Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard, >> Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss >> Jallais. >> >> >> The 4.11.0 final release is scheduled for January 23rd. >> >> >> [1] http://www.itk.org/Wiki/ITK/Git >> >> [2] http://open.cdash.org/index.php?project=Insight >> >> >> New Features >> ------------ >> >> * Wrapping Improvements >> - Python GetArrayFromImage() and GetImageFromArray() from >> ITKBridgeNumPy are directly accessible from the Python itk namespace. >> - The itk package loads much faster: individual modules are loaded >> only when required. >> - Conversion of ITK images from and to NumPy array using Bridge >> NumPy supports RGB, RGBA, and Vector images. >> - VNL vectors and VNL matrices can be converted from and to NumPy >> objects with respectively the new couple of functions >> GetArrayFromVnlVector()/GetVnlVectorFromArray() and >> GetArrayFromVnlMatrix()/GetVnlMatrixFromArray() >> - The global timestamp is used across all ITK Python modules when >> built statically >> - Wrap additional classes such as KernelFunctionBase >> - itk_python_add_test CMake function added for Python script testing >> in ITK modules >> >> * New Remote Modules >> - DVMeshNoise >> - Perturbing mesh vertices with additive gaussian noise >> - http://hdl.handle.net/10380/3567 >> - PerformanceBenchmarking >> - Accurate benchmarking of computational performance >> - http://hdl.handle.net/10380/3557 >> - PrincipalComponentsAnalysis >> - Principal components analysis of scalar, vector, and mesh vertex data >> - http://hdl.handle.net/10380/3386 >> - RLEImage >> - Run-length encoded memory compression scheme for itk::Image >> - http://hdl.handle.net/10380/3562 >> - MorphologicalContourInterpolation >> - N-D morphological contour interpolation >> - http://hdl.handle.net/10380/3563 >> - GenericLabelInterpolator >> - A generic interpolator for multi-label images >> - http://hdl.handle.net/10380/3506 >> - MultipleImageIterator >> - Iterate over multiple images simultaneously >> - http://hdl.handle.net/10380/3455 >> - FixedPointInverseDisplacementField >> - Computes inverse displacement field >> - http://hdl.handle.net/10380/3222 >> >> * Core Improvements >> - New ITK_TEMPLATE_EXPORT for templated classes resolves >> cross-binary dynamic_cast on Mac OSX >> - New MersenneTwisterRandomVariateGenerator instances are >> initialized with different seeds >> - Use compiler feature detection in CMake for C++11 features, etc. >> - New CMake macro itk_module_add_library for creating libraries in ITK >> modules >> - Improved support for ccache and distcc with >> CMAKE_<LANG>_COMPILER_LAUNCHER (CMake >=3.4 required) >> - Support for .sha512 ExternalData content links >> - GitHub Pages and data.kitware.com ExternalData repositories added >> - GPGPU system support for C++11 >> - Support of new compilers: Visual Studio 15 and XCode 8.2.1 >> (clang-800.0.42.1) >> >> * Filtering Improvements >> - HessianToObjectnessMeasure moved out of the ITKReview module >> - New UnsharpMaskImageFilter for image edge enhancement >> >> * IO Improvements >> - TransformFactory class has been moved to a separate module >> - Spline order added to BSplineTransform identifier >> - Improved NIFTI orientation support >> >> * Documentation Improvements >> - Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples >> >> * Third Party Library Updates >> - pygccxml updated to v1.8.0 >> - VNL updated to latest upstream (2016.07.06) >> - SWIG updated to v3.0.11 >> - KWSys updated to latest upstream (2016.11.21) >> - HDF5 updated to v1.8.17 >> - SCIFIO updated to latest upstream (2016.12.01) >> - DCMTK updated to 3.6.1_20121012 >> - CastXML to latest upstream (2016.01.28) >> >> * Improved Code Coverage -- we are at 85.44%! >> - Jon Haitz-Legarreta's extensive code coverage improvements >> - https://blog.kitware.com/why-should-we-spend-time-writing-tests/ >> >> * *Lots* of important bug fixes >> >> * And much more! See details in the log below. >> >> >> Changes from v4.10.0 to v4.11rc01 >> ------------------------------------------------ >> >> Bill Lorensen (4): >> COMP: Restore support for clang 3.0 compiler >> COMP: Consistent use of ModifiedTimeType >> ENH: Bump WikiExamples remote module version >> ENH: Bump WikiExamples version >> >> Bradley Lowekamp (57): >> ENH: Add registered TrasformIO's to exception >> ENH: Use template or constant for loop stop condition >> ENH: Updating SWIG version to 3.0.9 >> COMP: Address VS9 ambiguous std::abs call in Haung calculator >> COMP: Fix undefined NumericTraits::Zero and One errors with mingw64 >> BUG: Fix segfault if ~CleanUpObjectFactory called multiple times >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> BUG: demonstrate dynamic_cast failure when reading transforms >> BUG: Address itkHDF5ImageIO test failures for mingw64 >> ENH: Updating SWIG version to 3.0.10 >> ENH: Enable CMP0063 New behavior >> COMP: Enable hidden visibility property with vxl static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> COMP: Enable hidden visibility property with HDF5 static libraries >> BUG: Match Add2 function to AddImageFilter documentation >> ENH: Improve support for std::complex with PowImageFilter >> ENH: Explicitly mark required files for dependent tests >> COMP: Bypass XCode 7.3,8 internal compilation error >> COMP: Address CMake configuration error with itkJPEG2000Test03 property >> BUG: Correct test's REQUIRED_FILES to only the input. >> ENH: move HessianToObjectnessMeasure filter out of Review >> ENH: Separate TransformFactory class into separate module >> DOC: Add links between similar label to rgb filters >> ENH: Separate data from function calls >> COMP: Fix changed Graft method >> ENH: Reduce template dependencies on CalculateRotationMatrix >> ENH: Add Functor Accessors to LabelMapToRGB filter >> BUG: Enable VirtualDomain and FixedTransform in RegMethv4 >> BUG: Use BSpline Order 3 for 2D in transform factory. >> ENH: Add spline order to BSplineTransform's string id >> ENH: Adding initial CircleCi configuration file >> COMP: Fix float to unsigned integer conversion warnings >> BUG: Include installed modules in ITK_MODULES_ENABLED >> COMP: Address CMake error that ITKGPUCommon is not in export >> COMP: Address wrong library types with VS and shared libraries >> BUG: Ensure CreateImageIO is concurrent thread safe >> ENH: Mark HDF5 CMake options as internal >> COMP: Add template export declaration for ParametricPath >> COMP: Correct TEMPLATE_EXPLICIT definition in Path module >> ENH: Factor out common code in the TrasformFactoryBase registration >> ENH: Add CMake variable for max transform dimension, defaults 4 >> ENH: Create CMake module to check for private RTTI compatibility >> ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT >> COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT >> BUG: Add explicit instantiate for ObjectToObjectOptimizerBase >> COMP: Use add_definitions for CMake 2.8.9 compatibility >> COMP: Add warning suppression for distcc warning >> ENH: Explicitly instantiate the optimizer base over float >> BUG: Use IsLinear to check if transform is "affine" >> ENH: Remove unneeded includes of random iterator header >> ENH: Improve thread-safety for Generator, and unique New sequence >> ENH: Do not use global random generator >> BUG: Update v3 registration metrics to use local seed >> ENH: Prefer setting local seed over global in tests. >> ENH: Update SWIG to latest 3.0.11 release >> BUG: relax testing parameters for v3 translation registration >> BUG: Restore baseline for debug registration >> >> Caspar Goch (2): >> BUG: Use printable type for RGBA pixel ostream for ITK-3501 >> STYLE: Remove extra space for ITK-3501 >> >> Christina Rossmanith (1): >> DOC: Added more details to the class Doxygen documentation. >> >> Davis Vigneault (2): >> COMP: VCL_DEFINE_SPECIALIZATION not defined >> ENH: Add remote module DVMeshNoise >> >> Dženan Zukić (27): >> BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES) >> ENH: Adding MultipleImageIterator as a remote module >> COMP: enables TBB 4.4 back-end for VTK7's SMP >> COMP: enabling position independent code flag for FFTW >> ENH: adding configuration file for code reformatting tool clang-format >> ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3 >> COMP: Fixing -fPIC flag passing with Ninja build system >> ENH: Adding RLEImage as a remote module >> ENH: Updating uncrustify configuration to current git version >> STYLE: better compliance with ITK style >> STYLE: A new option in uncrustify, updating the config file accordingly >> ENH: Adding MorphologicalContourInterpolation as a remote module >> ENH: improving documentation >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> BUG: fixing buffer growing endlessly, as reported by Timothee Evain >> STYLE: default uncrustify configuration file is less aggressive >> COMP: Fixing warning >> COMP: VS15 compiler fix >> BUG: casting -9 to unsigned produced unwanted result >> BUG: Ensuring consistency between debug and release >> COMP: Updating LesionSizingToolkit after some recent compile fixes >> COMP: respect option METAIO_USE_NAMESPACE >> ENH: updating version of AnisotropicDiffusionLBR >> ENH: adding UnsharpMaskingImageFilter >> COMP: explicitly cast to output type >> BUG: double call to update would cause empty output image >> ENH: Updating RLEImage remote module. Change-log: >> >> Eugene Prilepin (4): >> ENH: Add the "ITK_USE_GPU" to ITK Config >> BUG: Fix API for set/get "LaplacianImageFilter" object >> ENH: Add support of images types with the 'CovariantVector' pixel type >> ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap >> >> Francois Budin (52): >> ENH: Adding GetArrayFromImage in python itk namespace >> ENH: Adding GetImageFromArray in python itk namespace >> ENH: *_WRAP_* variable per external module >> BUG: ImportImageFilter not responsible of memory management >> ENH: New remote module GenericLabelInterpolator >> DOC: SetNumberOfOutputs had wrong comment >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: lazyAttributes dictionary keys could be over-ridden >> BUG: Fix recent update of HDF5 (1.8.17) >> ENH: Update SCIFIO to latest version on 08/23/2016 >> ENH: Addition of the remote module FixedPointInverseDisplacementField >> ENH: Update SCIFIO to latest version on 08/29/2016 >> BUG: Path to commit was relative instead of absolute >> ENH: Path to SetupForDevelopment is relative, not absolute >> BUG: LSMImageIO write function was not checking image dimension >> BUG: LSMImageIO was not checking correctly image dimension >> BUG: Missing associated test data >> BUG: Missing associated test data >> ENH: Bump CMakeLists.txt version to 4.10.1. >> BUG: Quotes are not escaped in configured cmake file >> ENH: Improving API of Graft() in itk::Image >> ENH: Updating ITKGenericLabelInterpolator remote module >> ENH: Update ITKIOTransformDCMTK remote module >> BUG: Factory registration should depend on ITK_BUILD_SHARED >> COMP: Updating DCMTK compilation for Ninja >> ENH: Update version of DCMTK to 3.6.1_20121012 >> ENH: Update SCIFIO to latest version on 10/25/2016 >> BUG: Swig and PCRE do not support space in installation paths >> BUG: exit() call from within piped commands was not exiting the script >> BUG: Typo in folder creation command >> ENH: Only display message for transform registered multiple times in >> debug >> ENH: Image spacing must be positive >> BUG: Supported extensions by PNG IO were not added in constructor. >> DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect. >> ENH: Update SCIFIO to lastest (2016.12.01) >> ENH: FixedPointInverseDisplacementField moved to >> InsightSoftwareConsortium >> COMP: Remove compilation warnings >> ENH: Improved support of ccache and distcc >> BUG: GPUImage regression due to API change. >> ENH: Update Bridge Numpy (2016.12.05) >> ENH: Update VariationalRegistration to remove warnings during compilation >> ENH: FindPythonLibs does not support both debug and release >> python libraries >> ENH: Update VariationalRegistration >> BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase >> BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper >> BUG: Missing ITK_TEMPLATE_EXPORT in templated class >> BUG: Remove linkage warnings on MacOS >> BUG: HDF5 CMake installation directory variable had not been updated >> BUG: Missing include header in AnisotropicDiffusionBLR remote >> module hxx files >> COMP: Silencing unused variable warning in itkTimeStamp >> STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt >> COMP: OS*Barrier functions are deprecated on MacOS 10.12 >> >> GCC-XML Upstream (1): >> ENH: pygccxml v1.8.0 (reduced) >> >> Gert Wollny (1): >> BUG: Relax vnl_complex floating point comparisons for i386 >> >> Gilles Filippini (1): >> BUG: Use NATIVE_HBOOL for encoding HDF5 types. >> >> HDF Group (1): >> ENH: hdf5 1.8.17-r30218 (reduced) >> >> Hans Johnson (23): >> COMP: Use cmake WriteCompilerDetectionHeader >> ENH: Use itk_compiler_detection versions >> COMP: Need ITK_NOEXCEPT_OR_THROW macro. >> COMP: Provide consistent granular C++11 support >> STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT >> STYLE: Prefer to use consistent definitions >> COMP: Improve robustness of identifying the compiler standard used >> BUG: try_compile for AlignAs were always failing >> STYLE: Provide a well documented macro for repeated code >> STYLE: Delete functions in consistent way >> COMP: GPU baseclass ivars need to be protected >> COMP: Remove unnecessary circular dependancy >> COMP: Add long long usage for HDF5 >> COMP: Add long long usage for HDF5 >> STYLE: Prefer static small array to dynamic array >> BUG: Confusing interface for FFTW wisdom files >> STYLE: Output dimension from OutputImageType >> STYLE: Code review style cleanups >> STYLE: Prefer to use ITK AssertOrThrow macros >> ENH: Add OverrideBoundaryCondition logic >> ENH: Provide mechanism for enhanced NIFTI support >> BUG: Use NIFTI sform/qform conventions correctly >> ENH: Remove ambiguity about sform/qform >> >> Hastings Greer (8): >> BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: remove lsqr because of license issues ITK 1160 >> BUG: make itkTriangleHelper instantiable to ease wrapping >> BUG: initialize X to zero in lsmr Solve >> BUG: Labled Point Set Registration: test multiple labels >> BUG: Fix python wrapping of Cuberille remote module >> BUG: Add test demonstrating Python global timestamp issue >> >> Jean-Christophe Fillion-Robin (5): >> STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393 >> STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393 >> STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393 >> STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393 >> STYLE: MeshIO: Remove unused include from headers. See #3393 >> >> Johan Andruejol (3): >> ENH: Add missing itkKernelFunctionBase wrapping >> ENH: Add PrincipalComponentsAnalysis remote module >> COMP: Override cannot be used with inline >> >> Jon Haitz Legarreta (216): >> ENH: Improve itkFlatStructutingElement coverage. >> ENH: Improve itkPathToImageFilter class coverage. >> ENH: Improve itkIsolatedWatershedImageFilter coverage. >> ENH: Improve itkLogSigmoidTransferFunction coverage. >> STYLE: Improve itkBSplineTransform doc style. >> ENH: Improve GaborKernelFunctionCoverage. >> PERF: Remove duplicate itkMath include >> STYLE: Move the PrintSelf method to the end >> STYLE: Improve the itkScalarToRGBColormapImageFilter style. >> STYLE: Delete duplicate method documentation >> STYLE: Remove method documentation from implementation file >> STYLE: Improve GACLevelSet classes' style >> STYLE: Improve test style >> ENH: Improve itkGaussianDerivativeImageFilter coverage. >> ENH: Improve the itkScalarToRGBColormapImageFilter coverage >> STYLE: Improve itkScalarToRGBColormap test style >> ENH: Improve GACLSImageFilter classes' coverage >> STYLE: Improve comment style in GACLS tests >> ENH: Improve itkImportImageFilter coverage >> ENH: Improve itkVideoFileReader coverage >> ENH: Improve itkVideoFileWriter coverage >> STYLE: Improve the itkVideoFileWriter style. >> STYLE: Imrpove itkVideoFileReader style. >> ENH: Improve the itkBSplineControlPointImageFunction coverage >> STYLE: Improve the itkIntensityWindowingImageFilter style >> STYLE: Improve the itkIntensityWindowingImageFilter test style >> ENH: Improve ImageToSpatialObjectRegistrationMethod coverage >> STYLE: Improve test style >> ENH: Improve MaskNeighborhoodOperatorImageFilter coverage >> ENH: Improve itkMeshFileWriter coverage >> ENH: Improve RescaleIntensityImageFilter coverage. >> ENH: Improve itkClampImageFilter coverage. >> BUG: Fix ivar type casting in PrintSelf. >> STYLE: Improve MRIBiasFieldCorrectionFilter style. >> ENH: Improve MRIBiasFieldCorrectionFilter coverage. >> ENH: Improve itkIntensityWindowingImageFilter coverage >> BUG: Fix Run-time type information in CSV module classes. >> ENH: Improve the itkHistogram class code coverage. >> DOC: Fix documentation typo. >> STYLE: Improve the ImproveRescaleIntensityImageFilter style. >> PERF: Make the itkVideoFileReader ivars private >> PERF: Make itkVideoFileWriter ivars private >> ENH: Improve coverage for itk::OrientImageFilter. >> STYLE: Improve itk::OrientImageFilter class style. >> ENH: Improve itkCSVNumericObjectFileWriter coverage. >> ENH: Add missing standard class typdefs. >> ENH: Improve itkVoronoiSegmentationImageFilter coverage. >> ENH: Improve itkVoronoiSegmentationImageFilter style. >> STYLE: Improve the MalahanobisDistanceThresholdImageFunction style. >> ENH: Improve coverage for itkMalahanobisDistanceThreshold. >> ENH: Improve itk::MinimumMaximumImageCalculator coverage. >> ENH: Improve itkMinimumMaximumImageCalculator style. >> BUG: Fix type mismatch in test. >> STYLE: Improve itkPolylineMaskImagefilter style. >> ENH: Improve itkPolylineMaskImageFilter coverage. >> ENH: Improve itkFileListVideoStyle. >> ENH: Improve itkLandmarkBasedTransformInitializer coverage. >> ENH: Add baseline image to itkPolylineMaskImageFilter test. >> ENH: Improve coverage for itkBSplineTransformInitializer. >> STYLE: Improve itkBSplineTransformInitializer doc style. >> ENH: Enhance itkBSplineTransformInitializer implementation. >> DOC: Fix typo in method documentation. >> ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style. >> STYLE: Improve the itkSimpleContourExtractorImageFilter style. >> ENH: Exercise the class' Get methods. >> ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter. >> ENH: Improve style for itkThresholdLabelerImageFilter. >> ENH: Improve itkThresholdLabelerImageFilter coverage. >> ENH: Get internal ImageIO via a const macro. >> ENH: Improve the itkSimpleContourExtractorImageFilter coverage. >> STYLE: Improve the itkMetaArray class style. >> ENH: Improve MetaArrayReader/Writer coverages. >> ENH: Improve the itkCovarianceImageFunction style. >> STYLE: Improve itkVoronoiDiagram2DGenerator style. >> ENH: Improve VoronoiDiagram2DGenerator coverage. >> STYLE: Improve the itkBayesianClassifierImageFilter style. >> STYLE: Improve the itkMetaArrayWriter style. >> ENH: Improve itkCovarianteImageFunction coverage. >> COMP: Fix signed/unsigned int comparison warning. >> DOC: Improve itkGrayscaleDilateImageFilter documentation. >> DOC: Improve documentation for itkGrayscaleErodeImageFilter. >> DOC: Improve ConfigureHistogram method documentation. >> STYLE: Improve the itkMovingHistogramMorphologyImagefilter style. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkGaussianInterpolateImageFunction style. >> ENH: Improve coverage for itkGaussianInterpolateImageFunction. >> ENH: Improve itkBayesianClassifierImageFilter coverage. >> ENH: Add itkBSplineControlPointImageFilter RTTI. >> STYLE: Improve itkBSplinecontrolPointImageFilter style. >> ENH: Improve itkBSplineControlPointImageFilter coverage. >> ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4. >> STYLE: Improve the class implementation file style. >> STYLE: Improve the itkResampleImageFilter style. >> DOC: Fix typo in GetMTime method doc. >> STYLE: Remove out-of-body implementation doc >> ENH: Improve itkResampleImageFilter coverage. >> ENH: Improve itkAbsImageAdaptor and Filter coverage. >> BUG: Fix itkLSMImageIO class' Superclass name. >> ENH: Improve the itkInterpolateImagePointsFilter coverage. >> ENH: Improve itkPowImageFilter coverage. >> BUG: Fix ConvolutionImageFilter RTTI. >> STYLE: Use initialization lists. >> STYLE: Improve BinaryFunctorImageFilter style. >> ENH: Improve itkMinimumImageFilter code coverage. >> BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion. >> ENH: Improve MaximumImageFilter coverage. >> BUG: Fix conversion to PixelType conversion. >> COMP: Fix double to unsigned char conversion warning. >> ENH: Improve coverage for itkNormalizeToConstantImageFilter. >> BUG: Fix itkSquaredDifferenceErrorFunction RTTI. >> ENH: Improve itkMeanImageFunctionCoverage. >> ENH: Improve itkSquareImageFilter coverage. >> STYLE: Improve the itkSquaredDifferenceErrorFunction style. >> STYLE: Enhance style for itkNormalizeToConstantImageFilter. >> STYLE: Improve itkMeanImageFunction style. >> ENH: Remove unnecesary call to filter print. >> ENH: Improve itkRegionOfInterestImageFilter coverage. >> STYLE: Improve itkRegionOfInterestImageFilter style. >> STYLE: Improve itkPasteImageFilter style. >> STYLE: Improve itkJoinSeriesImageFilter style. >> BUG: Fix itkPadLabelMapFilter RTTI Superclass. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve itkBayesianClassifiertImageFilter coverage. >> ENH: Improve itkPadLabelMapFilter coverage. >> ENH: Improve itkJoinSeriesImageFilter coverage. >> ENH: Improve the itkPasteImageFilter coverage. >> ENH: Improve MeanImageFilter coverage. >> COMP: Address std::cout.precision conversion warning. >> ENH: Improve TernaryMagnitudeImageFilter coverage. >> ENH: Improve FFTConvolutionImageFilter coverage. >> DOC: Fix class documentation in ternary magnitude filters. >> ENH: Improve ConstrainedValueDifferenceImageFilter coverage. >> ENH: Improve AndImageFilter coverage. >> ENH: Add baseline test to itkTernaryMagnitudeImageFilter. >> ENH: Use MD5 comparison framework in baseline test. >> ENH: Improve itk::VectorRescaleIntensityImageFilter coverage. >> STYLE: Improve the itkVectorRescaleIntensityImageFilter style. >> ENH: Print missing ivar in filter PrintSelf method. >> ENH: Improve itkComplexToImaginaryFilter coverage. >> ENH: Improve itkComplexToPhaseImageFilter coverage. >> ENH: Improve itkComplexToModulusImageFilter coverage. >> ENH: Improve itkComplexToRealImageFilter coverage. >> ENH: Improve itkVectorResampleImageFilter coverage. >> ENH: Add GetTransform method. >> ENH: Improve itkConstrainedValueAdditionImageFilter coverage. >> ENH: Improve itkModulusImageFilter coverage. >> ENH: Improve itkLog10ImageFilter coverage. >> ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage. >> ENH: Improve itkLogImageFilter coverage. >> ENH: Improve itkInvertIntensityImageFilter coverage. >> STYLE: Improve itkInvertIntensityImageFilter style. >> DOC: Add missing doc to itkInvertIntensityImageFilter. >> STYLE: Improve itkIntensityWindowingImageFilter style. >> STYLE: Use initialization lists. >> ENH: Improve itkIntensityWindowingImageFilter coverage. >> ENH: Improve itkNaryMaximumImageFilter coverage. >> COMP: Fix std::precision type casting warning. >> ENH: Improve itkPointSetToPointSetRegistrationMethod coverage. >> STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style. >> ENH: Remove SmartPointers being explicitly initialized to null. >> STYLE: Improve the itkPointSetToImageRegistrationMethod style. >> ENH: Improve itkPointSetToImageRegistration coverage. >> STYLE: Change the name of the itkPointSetToImageRegistrationMethod test. >> STYLE: Improve itkVectorResampleImageFilter style. >> STYLE: Improve the itkAntiAliasBinaryImageFilter style. >> ENH: Improve trigonometric function filters' coverage. >> STYLE: Remove test names from std::out messages. >> ENH: Improve Boolean Algebra ImageFilters coverage. >> STYLE: Improve the EuclideanDistancePointMetric style. >> ENH: Improve itkSigmoidImageFilter coverage. >> STYLE: Improve itkCropImageFilter style. >> ENH: Improve itkCropImageFilter coverage. >> ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage. >> ENH: Improve itkRescaleIntensityImageFilter coverage. >> ENH: Improve the itkMatrixSelectionImageFilter coverage. >> ENH: Improve itkTanImageFilter and Adaptor coverage. >> ENH: Increase itkSqrtImageFilter and Adaptor coverage. >> ENH: Increase itkTernaryOperatorImageFilter coverage. >> ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage. >> STYLE: Improve itkScalarImagekmeansImageFilter style. >> STYLE: Conform to TEST_SET_GET_VALUE definition. >> BUG: Fix uninitialized variable due to dynamic analysis defect. >> BUG: Fix uninitialized variable defect reported by valgrind. >> ENH: Improve the itkPointSetToPointSetRegistrationTest. >> ENH: Improve the itkPointSetToImageRegistrationTest. >> ENH: Increas BinaryMagnitudeImageFilter coverage. >> STYLE: Remove test name from std output. >> ENH: Increase MagnitudeImageFilter coverage. >> BUG: Fix uninitialized variable defect reported by valgrind. >> BUG: Fix Superclass name in RTTI. >> STYLE: Improve itkFrustumSpatialFunction style. >> STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style. >> BUG: Fix Superclass template argument list. >> STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style. >> STYLE: Improve the itkCheckerBoardImageFilter class style. >> ENH: Improve the itk::LabelVotingImageFilter coverage. >> ENH: Improve itkCheckerBoardImageFilter coverage. >> STYLE: Improve itk::LabelVotingImageFilter style. >> STYLE: Improve the itkHoughTransform2DCirclesImageFilter style. >> ENH: Add test for itk::FrustumSpatialFunction class. >> ENH: Improve itkConnectedThresholdImageFilter coverage. >> STYLE: Improve itkConnectedThresholdImageFilter style. >> BUG: Fix FrustumSpatialFunction internal precision conversion. >> COMP: Fix implicit conversion warning. >> STYLE: Improve itkThresholdImageFilter style. >> ENH: Add test for itk::TorusInteriorExteriorSpatialFunction. >> BUG: Fix Superclass template argument list. >> ENH: Improve itkUnsharpMaskingImageFilter implementation. >> ENH: Improve the itkUnsharpMaskingImageFilter coverage. >> ENH: Fix UnsharpMaskingImageFilter test inconsistencies. >> BUG: Add missing itkTypeMacro. >> DOC: Document the member variables. >> BUG: Fix the itkImageSource RTTI class name, >> STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style. >> ENH: Finish itkGaussianInterpolateImageFunction PrintSelf. >> STYLE: Improve itkLabelOverlapMeasurementImageFilter style. >> >> KWSys Robot (6): >> KWSys 2016-06-30 (96f06c8e) >> KWSys 2016-10-23 (b630d2f5) >> KWSys 2016-11-03 (37306a1c) >> KWSys 2016-11-08 (2b3e2b1c) >> KWSys 2016-11-09 (18c65411) >> KWSys 2016-11-21 (cb55cf5a) >> >> Maeliss Jallais (1): >> BUG: Add unsigned and signed short to the wrapping of vnl_matrix >> >> Matthew McCormick (85): >> PERF: Simplify HilbertPath numberOfPathVertices computation. >> BUG: CID 1355469 NNetClassifierTest4 unintended integer division. >> BUG: Update Cuberille Remote for version check fix. >> ENH: Bump ITK version to 4.11.0. >> BUG: Fix HDF5ImageIO type information. >> BUG: Fix H5File memory leak in HDF5ImageIO. >> DOC: Collect Francois Budin's contributions in .mailmap >> BUG: Limit WRAP_ITK_MODULES when building externally >> STYLE: Improvements to ResourceProbe report output. >> ENH: Add a useTabs argument to ResourceProbe::Report. >> ENH: Add standard error measure to the ResourceProbe >> ENH: Add itk_python_add_test function. >> BUG: Remove VNL file from subtree merge. >> COMP: Fix wrapping with a space in the Python include path >> BUG: Fix PermuteAxesImageFilter pipeline method visibility >> BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter >> BUG: ResampleImageFilter honor isInside output of the transform method >> COMP: Avoid recursive include of itkMath.h >> COMP: Fix VXL header installation locations >> BUG: ClampImageFilterTest for older GCC, InPlaceOn >> DOC: Add CONTRIBUTING.md file to the top level. >> COMP: Update VariationalRegistration to address Doxygen warnings >> BUG: Compiler detections file installed into ITK build tree location >> COMP: Do not use string(TIMESTAMP. >> COMP: Remove HDF5 -std=c99 for C++ files >> BUG: Do not build HDF5 static library with a shared build >> ENH: Add PerformanceBenchmarking Remote Module >> COMP: Remove duplicate wrappings for ResampleImageFilter >> BUG: Put Python test output files in the build tree >> BUG: Improve HDF5ImageIO::CloseDataSet name >> COMP: Use add_python_test PythonLazyLoadingImage >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: Index,Size,Offset constructors present in Python with C++11 >> COMP: Address missing override it itkFactoryTestLib.cxx >> BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT >> ENH: Bump SetupForDevelopment version >> BUG: Add missing ZLib deflate support to HDF5 >> BUG: Address memory leak, remove NumPy build dep in BridgeNumPy >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory >> BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include >> ITK_WRAP_IMAGE_DIMS >> BUG: RichardsonLucyDeconvolutionImageFilter with non-null input >> Image Origin >> BUG: Fix inconsistent Twister start with Initialize(seed) and >> SetSeed(seed) >> BUG: Do not hard code CMake scripts in HDF5 >> COMP: Workaround Emscripten ITKCommon test build failure >> COMP: Do embed fancy HDF5 libsettings with Emscripten >> COMP: Add missing H5T_patch_vlen_file declaration >> ENH: Bump CastXML to 2016-10-11 master. >> COMP: Workaround Emscripten ITKCommon test build failure >> BUG: Swap CastXML hashes for Mac OSX and Windows >> ENH: Sync ExternalData.cmake with upstream CMake 3.6.2 >> COMP: Fix VNL tests when cross-compiling >> ENH: ExternalData multi-algorithm support >> ENH: ExternalData support for data.kitware.com >> BUG: Install missing H5pubconf.h >> BUG: Use SpacePrecisionType in TileImageFilter >> BUG: Use internal ExternalData_Add_Target >> ENH: Run .sha512, .md5 simultaneous modification pre-commit check >> BUG: Correct CastXML Windows binary >> BUG: Support non-zero Index in LevelSetNeighborhoodExtractor >> ENH: Add ArchiveTestingDataOnGirder.py >> BUG: Correct AtanRegularizationHeavisideStepFunction derivative >> ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh >> BUG: Remove extra HessianToObjectness content links >> ENH: Wrap SpatialFunction float types with ITK_WRAP_float >> BUG: Bump PerformanceBenchmarking to 2016-11-04 >> BUG: itk_python_expression_add_test too many quotes. >> ENH: Wrap VectorImage with complex real pixel types >> ENH: Bump PerformanceBenchmarking to 2016-11-07 >> BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter >> ENH: Create itk_module_add_library macro >> BUG: Update computeCodeCoverageLocally.sh for KWStyle addition >> COMP: Install a newer version of CMake on CircleCI >> ENH: Use GitHub Pages as the first ExternalData resource >> ENH: Add tests to demonstrate OSX dynamic_cast failure >> BUG: Use random seed with for MersenneTwisterRandomVariateGenerator. >> BUG: Enable program global timestamp >> BUG: Set random number seed in Mattes metric test >> BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping >> BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON >> BUG: Set random number seed mutual information metric tests >> BUG: Wrap std::vector< itk.Point > >> BUG: Fix wrapping of LandmarkBasedTransformInitializer >> BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter >> DOC: Add Dženan Zukić to .mailmap >> >> Max Smolens (4): >> COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field >> BUG: CID-1355438 QuadEdgeTest1 resource leaks >> COMP: CID-1355472 MIRegistrationFunction unused value >> COMP: Fix link errors for VNL template instantiations on Windows >> >> Mayeul Chassagnard (7): >> BUG: Test added and error fixed in HDF5ImageIO >> ENH: Update add_library TO itk_module_add_library >> COMP: Set Policy CMP0023 target_link_libraries for >> Modules/ThirdParty/VNLI... >> BUG: Add ITK_TEMPLATE_EXPORT to template classes >> BUG: Fix errors linked to dyn_cast merge >> BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes >> BUG: dash3win7 dashboard build error unresolved external symbol >> >> Michka Popoff (3): >> ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0 >> ENH: Update igenerator.py for pygccxml v1.8.0 >> COMP: Use pygccxml's public API for apply definitions >> >> Pierre Barbier de Reuille (2): >> COMP: Fix function naming error when using FFTWD >> COMP: Fix function naming error when using FFTWD >> >> Sean McBride (1): >> COMP: Bypass HDF5 bugs under TSan >> >> Simon Rit (2): >> COMP: remove C++11 compiler warning for CUDA compilations >> COMP: remove C++11 compiler warning for CUDA compilations >> >> Somesh Kashyap (2): >> BUG: Override TransformCategoryType for >> AzimuthElevationToCartesianTransform >> BUG: -Added test case for itkAzimuthElevationToCartesianTransform >> >> Sumedha Singla (1): >> ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module >> >> Taylor Braun-Jones (4): >> COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled >> COMP: Fix truncation from double to float warning >> DOC: Fix incorrect itkFactorylessNewMacro documentation >> COMP: Only include the headers for required OpenCV modules >> >> Thien Nguyen (1): >> PERF: SmapsFileParser unnecessary dynamic_cast >> >> VXL Maintainers (4): >> VNL 2016-05-15 (14f97ab4) >> VNL 2016-06-22 (23a93adb) >> VNL 2016-06-29 (d62a2d70) >> VNL 2016-07-06 (acfa62cc) >> >> Vladimir S. FONOV (1): >> COMP: Build against GCC 5.3.1 >> >> Zach Williamson (2): >> ENH: Update Remote Module Tags >> BUG: Fix Python Wrappings in C++11 >> >> Ziv Yaniv (1): >> BUG: Metric sampling percentage accepted values outside (0.0, 1.0]. >> >> >> ----------------------------------------------------- >> Errors or omissions? Please fix them here: >> >> https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit >> _____________________________________ >> Powered by www.kitware.com >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Kitware offers ITK Training Courses, for more information visit: >> http://www.kitware.com/products/protraining.php >> >> Please keep messages on-topic and check the ITK FAQ at: >> http://www.itk.org/Wiki/ITK_FAQ >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/insight-users > _______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Kitware offers ITK Training Courses, for more information visit: http://kitware.com/products/protraining.php Please keep messages on-topic and check the ITK FAQ at: http://www.itk.org/Wiki/ITK_FAQ Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/insight-developers
