Eroma created AIRAVATA-1712:
-------------------------------
Summary: Experiments on BR2 fails during creating scratch
directory in w111
Key: AIRAVATA-1712
URL: https://issues.apache.org/jira/browse/AIRAVATA-1712
Project: Airavata
Issue Type: Bug
Affects Versions: 0.16
Environment: http://dev.test-drive.airavata.org/portal/pga/public/
Reporter: Eroma
Created and launched multiple experiments (Amber_Sander, Echo and AutoDock) on
BR2.
Experiment failed with exp state = FAILED and No job status.
Error message displayed in PGA
org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during creating
directory
:/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4
to remote file bigred2.uits.iu.edu:rFile at
org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581)
at
org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83)
at
org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148)
at
org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745) Caused by:
org.apache.airavata.gsi.ssh.api.SSHApiException: mkdir: cannot create directory
`/N/dc2/scratch': Permission denied at
org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698) at
org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554)
... 10 more org.apache.airavata.gfac.GFacException: Error Invoking
Handlers:Error Executing a InFlow Handler
org.apache.airavata.gfac.GFacException: Error launching the Job at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:450)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148)
at
org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745) Caused by:
org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing
a InFlow Handler at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:692)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437)
... 5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking
Handlers:Error Executing a InFlow Handler at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:859)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635)
... 6 more Caused by: org.apache.airavata.gfac.GFacException: Error Executing
a InFlow Handler at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:848)
... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed
during creating directory
:/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4
to remote file bigred2.uits.iu.edu:rFile at
org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581)
at
org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83)
at
org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63)
at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844)
... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: mkdir:
cannot create directory `/N/dc2/scratch': Permission denied at
org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698) at
org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554)
... 10
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