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https://issues.apache.org/jira/browse/AIRAVATA-2674?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16364716#comment-16364716
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ASF GitHub Bot commented on AIRAVATA-2674:
------------------------------------------
machristie commented on a change in pull request #81: AIRAVATA-2674 FIXED
URL:
https://github.com/apache/airavata-php-gateway/pull/81#discussion_r168300014
##########
File path: app/config/app.php
##########
@@ -78,7 +78,7 @@
|
*/
- 'key' => 'tez6xP65a0BGj1ZtX7PPfYhC9OIW9AjS',
+ 'key' => '5Tw7jczI5sFCyzbxUr7b1lbSyeFC1doT',
Review comment:
Can you remove this change?
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> Re-write file names which has spaces in them
> --------------------------------------------
>
> Key: AIRAVATA-2674
> URL: https://issues.apache.org/jira/browse/AIRAVATA-2674
> Project: Airavata
> Issue Type: Sub-task
> Components: Airavata API, PGA PHP Web Gateway
> Affects Versions: 0.18
> Reporter: Eroma
> Priority: Major
> Fix For: 0.18
>
>
> Currently airavata could not handle experiment input files with space in the
> file name. When an experiment is submitted with a space in the name it fails
> at data staging with errors [1] in the log
>
> Users can be educated but this could keep occurring with new users, etc...
> File name to rewrite to remove the space or to replace it wth another
> character.
>
> [1]
> org.apache.airavata.gfac.core.GFacException: Error: userFriendly msg :Error
> while executing DATA_STAGING task, actual msg :expId:
> MACs_in_Metagenomes_27ef130b-9428-4b74-8842-325a36bc544c, processId:
> PROCESS_42be4be6-161f-428d-8539-5f375493179a, taskId:
> TASK_b8f396cd-0e4e-4564-9101-5bcd4b4ddb6f, type: DATA_STAGING :- DATA_STAGING
> failed. Reason: Source or destination uri is not correct source :
> file://searchsra.scigap.org:/var/www/portals/gateway-user-data/searching-sra/aalker/DefaultProject/MACs_in_Metagenomes1518210858/SRR_Acc_List
> (1).txt, destination :
> SCP://g...@js-169-158.jetstream-cloud.org:22/home/gw/airavata-workdirs/PROCESS_42be4be6-161f-428d-8539-5f375493179a/
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.checkFailures(GFacEngineImpl.java:628)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:609)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:347)
> at
> org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
> at
> org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
> at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86) at
> org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
> at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
> at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
> at java.lang.Thread.run(Thread.java:748)
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