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https://issues.apache.org/jira/browse/FLINK-17918?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17123491#comment-17123491
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Jark Wu commented on FLINK-17918:
---------------------------------

[~pnowojski] Oh, sorry I didn't notice the inner LIMIT in the query (tests are 
migrated from blink code). Then I think you are right, the root cause is in 
{{AppendOnlyTopNFunction}}. I can help to prepare a pull request for this. 

But I still can't understand why the join IT cases are failed, the join cases 
doesn't contain LIMIT and the join operators doesn't mutate values in state. 

> Blink Jobs are loosing data on recovery
> ---------------------------------------
>
>                 Key: FLINK-17918
>                 URL: https://issues.apache.org/jira/browse/FLINK-17918
>             Project: Flink
>          Issue Type: Bug
>          Components: Runtime / Checkpointing, Table SQL / Runtime
>    Affects Versions: 1.11.0
>            Reporter: Piotr Nowojski
>            Assignee: Jark Wu
>            Priority: Blocker
>             Fix For: 1.11.0
>
>
> After trying to enable unaligned checkpoints by default, a lot of Blink 
> streaming SQL/Table API tests containing joins or set operations are throwing 
> errors that are indicating we are loosing some data (full records, without 
> deserialisation errors). Example errors:
> {noformat}
> [ERROR] Failures: 
> [ERROR]   JoinITCase.testFullJoinWithEqualPk:775 expected:<List(1,1, 2,2, 
> 3,3, null,4, null,5)> but was:<List(2,2, 3,3, null,1, null,4, null,5)>
> [ERROR]   JoinITCase.testStreamJoinWithSameRecord:391 expected:<List(1,1,1,1, 
> 1,1,1,1, 2,2,2,2, 2,2,2,2, 3,3,3,3, 3,3,3,3, 4,4,4,4, 4,4,4,4, 5,5,5,5, 
> 5,5,5,5)> but was:<List()>
> [ERROR]   SemiAntiJoinStreamITCase.testAntiJoin:352 expected:<0> but was:<1>
> [ERROR]   SetOperatorsITCase.testIntersect:55 expected:<MutableList(1,1,Hi, 
> 2,2,Hello, 3,2,Hello world)> but was:<List()>
> [ERROR]   JoinITCase.testJoinPushThroughJoin:1272 expected:<List(1,0,Hi, 
> 2,1,Hello, 2,1,Hello world)> but was:<List(2,1,Hello, 2,1,Hello world)>
> {noformat}
>  



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