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https://issues.apache.org/jira/browse/FLINK-17918?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=17125109#comment-17125109
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Arvid Heise commented on FLINK-17918:
-------------------------------------

The ticket originally was "[FLINK-17918] Jobs with two input operators are 
loosing data with unaligned checkpoints" and indeed the test failures in the 
description are caused in unaligned checkpoint code.
Discovering the LIMIT bug was more or less just a byproduct apparently.
Since there is already a PR for LIMIT under FLINK-17918, I guess we should fork 
out a new ticket and update the description of this ticket to only mention 
LIMIT.

> Blink Jobs are loosing data on recovery
> ---------------------------------------
>
>                 Key: FLINK-17918
>                 URL: https://issues.apache.org/jira/browse/FLINK-17918
>             Project: Flink
>          Issue Type: Bug
>          Components: Runtime / Checkpointing, Table SQL / Runtime
>    Affects Versions: 1.11.0
>            Reporter: Piotr Nowojski
>            Assignee: Jark Wu
>            Priority: Blocker
>              Labels: pull-request-available
>             Fix For: 1.11.0
>
>
> After trying to enable unaligned checkpoints by default, a lot of Blink 
> streaming SQL/Table API tests containing joins or set operations are throwing 
> errors that are indicating we are loosing some data (full records, without 
> deserialisation errors). Example errors:
> {noformat}
> [ERROR] Failures: 
> [ERROR]   JoinITCase.testFullJoinWithEqualPk:775 expected:<List(1,1, 2,2, 
> 3,3, null,4, null,5)> but was:<List(2,2, 3,3, null,1, null,4, null,5)>
> [ERROR]   JoinITCase.testStreamJoinWithSameRecord:391 expected:<List(1,1,1,1, 
> 1,1,1,1, 2,2,2,2, 2,2,2,2, 3,3,3,3, 3,3,3,3, 4,4,4,4, 4,4,4,4, 5,5,5,5, 
> 5,5,5,5)> but was:<List()>
> [ERROR]   SemiAntiJoinStreamITCase.testAntiJoin:352 expected:<0> but was:<1>
> [ERROR]   SetOperatorsITCase.testIntersect:55 expected:<MutableList(1,1,Hi, 
> 2,2,Hello, 3,2,Hello world)> but was:<List()>
> [ERROR]   JoinITCase.testJoinPushThroughJoin:1272 expected:<List(1,0,Hi, 
> 2,1,Hello, 2,1,Hello world)> but was:<List(2,1,Hello, 2,1,Hello world)>
> {noformat}
>  



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