Github user alopresto commented on the issue:

    https://github.com/apache/nifi/pull/834
  
    Ok I got it to a point where it can be run multiple times on an 
already-encrypted file and the only side-effect is that previously encrypted 
properties will look like (after 2 executions):
    
    ```
    
nifi.sensitive.props.key=C7AlglOx5QOmggfM||EG+qM9ubldyr8J73RmXCyWIxRKCzn6JyXv7mN6DkV51oDoRSdnWWXbALfKcKFw
    nifi.sensitive.props.key.protected=aes/gcm/256
    nifi.sensitive.props.key.protected=aes/gcm/256
    ```
    
    Fixing that and then will push. 


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