[
https://issues.apache.org/jira/browse/SPARK-4816?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15056168#comment-15056168
]
RJ Nowling edited comment on SPARK-4816 at 12/14/15 4:19 PM:
-------------------------------------------------------------
I think [SPARK-9507] fixed the issue. I checked out git commit
{{5ad9f950c4bd0042d79cdccb5277c10f8412be85}} (the commit before
[https://github.com/apache/spark/commit/b53ca247d4a965002a9f31758ea2b28fe117d45f])
and found that the {{netlib-native}} libraries were missing:
{code}
$ git checkout 5ad9f950c4bd0042d79cdccb5277c10f8412be85
$ mvn -Pnetlib-lgpl -Phadoop-2.4 -Dhadoop.version=2.4.0 -DskipTests clean
package
$ zipinfo -1
assembly/target/scala-2.10/spark-assembly-1.4.2-SNAPSHOT-hadoop2.4.0.jar | grep
netlib-native
(No output)
{code}
I then checked out {{b53ca247d4a965002a9f31758ea2b28fe117d45f}} and built it to
test:
{code}
$ zipinfo -1
assembly/target/scala-2.10/spark-assembly-1.4.2-SNAPSHOT-hadoop2.4.0.jar | grep
netlib-native
netlib-native_ref-osx-x86_64.jnilib
netlib-native_ref-osx-x86_64.jnilib.asc
netlib-native_ref-osx-x86_64.pom
netlib-native_ref-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.properties
netlib-native_ref-linux-x86_64.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.properties
netlib-native_ref-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.properties
netlib-native_ref-win-x86_64.dll
netlib-native_ref-win-x86_64.dll.asc
netlib-native_ref-win-x86_64.pom
netlib-native_ref-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.properties
netlib-native_ref-win-i686.dll
netlib-native_ref-win-i686.dll.asc
netlib-native_ref-win-i686.pom
netlib-native_ref-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.properties
netlib-native_ref-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.properties
netlib-native_system-osx-x86_64.jnilib
netlib-native_system-osx-x86_64.jnilib.asc
netlib-native_system-osx-x86_64.pom
netlib-native_system-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.properties
netlib-native_system-linux-x86_64.pom.asc
netlib-native_system-linux-x86_64.pom
netlib-native_system-linux-x86_64.so
netlib-native_system-linux-x86_64.so.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.properties
netlib-native_system-linux-i686.pom
netlib-native_system-linux-i686.so.asc
netlib-native_system-linux-i686.pom.asc
netlib-native_system-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.properties
netlib-native_system-linux-armhf.pom
netlib-native_system-linux-armhf.so.asc
netlib-native_system-linux-armhf.pom.asc
netlib-native_system-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.properties
netlib-native_system-win-x86_64.dll
netlib-native_system-win-x86_64.dll.asc
netlib-native_system-win-x86_64.pom
netlib-native_system-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.properties
netlib-native_system-win-i686.dll
netlib-native_system-win-i686.dll.asc
netlib-native_system-win-i686.pom
netlib-native_system-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.properties
{code}
As such, I can confirm that [SPARK-9507] resolved the issue that was probably
created by the changes in [SPARK-8819].
was (Author: rnowling):
I think [SPARK-9507] fixed the issue. I checked out git commit
{{5ad9f950c4bd0042d79cdccb5277c10f8412be85}} (the commit before
[https://github.com/apache/spark/commit/b53ca247d4a965002a9f31758ea2b28fe117d45f])
and found that the {{netlib-native}} libraries were missing:
{code}
$ git checkout 5ad9f950c4bd0042d79cdccb5277c10f8412be85
$ mvn -Pnetlib-lgpl -Phadoop-2.4 -Dhadoop.version=2.4.0 -DskipTests clean
package
$ zipinfo -1
assembly/target/scala-2.10/spark-assembly-1.4.2-SNAPSHOT-hadoop2.4.0.jar | grep
netlib-native
(No output)
{code}
I then checked out {{b53ca247d4a965002a9f31758ea2b28fe117d45f}} and built it to
test:
{code}
zipinfo -1
assembly/target/scala-2.10/spark-assembly-1.4.2-SNAPSHOT-hadoop2.4.0.jar | grep
netlib-native
netlib-native_ref-osx-x86_64.jnilib
netlib-native_ref-osx-x86_64.jnilib.asc
netlib-native_ref-osx-x86_64.pom
netlib-native_ref-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.properties
netlib-native_ref-linux-x86_64.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.properties
netlib-native_ref-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.properties
netlib-native_ref-win-x86_64.dll
netlib-native_ref-win-x86_64.dll.asc
netlib-native_ref-win-x86_64.pom
netlib-native_ref-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.properties
netlib-native_ref-win-i686.dll
netlib-native_ref-win-i686.dll.asc
netlib-native_ref-win-i686.pom
netlib-native_ref-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.properties
netlib-native_ref-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.properties
netlib-native_system-osx-x86_64.jnilib
netlib-native_system-osx-x86_64.jnilib.asc
netlib-native_system-osx-x86_64.pom
netlib-native_system-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.properties
netlib-native_system-linux-x86_64.pom.asc
netlib-native_system-linux-x86_64.pom
netlib-native_system-linux-x86_64.so
netlib-native_system-linux-x86_64.so.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.properties
netlib-native_system-linux-i686.pom
netlib-native_system-linux-i686.so.asc
netlib-native_system-linux-i686.pom.asc
netlib-native_system-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.properties
netlib-native_system-linux-armhf.pom
netlib-native_system-linux-armhf.so.asc
netlib-native_system-linux-armhf.pom.asc
netlib-native_system-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.properties
netlib-native_system-win-x86_64.dll
netlib-native_system-win-x86_64.dll.asc
netlib-native_system-win-x86_64.pom
netlib-native_system-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.properties
netlib-native_system-win-i686.dll
netlib-native_system-win-i686.dll.asc
netlib-native_system-win-i686.pom
netlib-native_system-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.properties
{code}
As such, I can confirm that [SPARK-9507] resolved the issue that was probably
created by the changes in [SPARK-8819].
> Maven profile netlib-lgpl does not work
> ---------------------------------------
>
> Key: SPARK-4816
> URL: https://issues.apache.org/jira/browse/SPARK-4816
> Project: Spark
> Issue Type: Bug
> Components: Build
> Affects Versions: 1.1.0
> Environment: maven 3.0.5 / Ubuntu
> Reporter: Guillaume Pitel
> Priority: Minor
> Fix For: 1.1.1
>
>
> When doing what the documentation recommends to recompile Spark with Netlib
> Native system binding (i.e. to bind with openblas or, in my case, MKL),
> mvn -Pnetlib-lgpl -Pyarn -Phadoop-2.3 -Dhadoop.version=2.3.0 -DskipTests
> clean package
> The resulting assembly jar still lacked the netlib-system class. (I checked
> the content of spark-assembly...jar)
> When forcing the netlib-lgpl profile in MLLib package to be active, the jar
> is correctly built.
> So I guess it's a problem with the way maven passes profiles activitations to
> children modules.
> Also, despite the documentation claiming that if the job's jar contains
> netlib with necessary bindings, it should works, it does not. The classloader
> must be unhappy with two occurrences of netlib ?
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