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https://issues.apache.org/jira/browse/SYSTEMML-995?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15538879#comment-15538879
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Mike Dusenberry edited comment on SYSTEMML-995 at 10/1/16 5:38 PM:
-------------------------------------------------------------------
Also, just to follow up with that null pointer exception, here's the
stacktrace. Likely this has been fixed with your reblock patch.
{code}
Caused by: org.apache.sysml.runtime.DMLRuntimeException: ERROR: Runtime error
in program block generated from statement block between lines 146 and 156 --
Error evaluating instruction:
SPARK°mapmm°_mVar1312·MATRIX·DOUBLE°W·MATRIX·DOUBLE°_mVar1313·MATRIX·DOUBLE°RIGHT°false°MULTI_BLOCK
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeSingleInstruction(ProgramBlock.java:335)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeInstructions(ProgramBlock.java:224)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.execute(ProgramBlock.java:168)
at
org.apache.sysml.runtime.controlprogram.ForProgramBlock.execute(ForProgramBlock.java:150)
... 29 more
Caused by: java.lang.NullPointerException
at
org.apache.sysml.runtime.controlprogram.caching.CacheBlockFactory.getCode(CacheBlockFactory.java:59)
at
org.apache.sysml.runtime.instructions.spark.data.PartitionedBlock.writeHeaderAndPayload(PartitionedBlock.java:355)
at
org.apache.sysml.runtime.instructions.spark.data.PartitionedBlock.writeExternal(PartitionedBlock.java:332)
at
java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at
org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
at
org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:203)
at
org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102)
at
org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
at
org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
at org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326)
at
org.apache.spark.api.java.JavaSparkContext.broadcast(JavaSparkContext.scala:639)
at
org.apache.sysml.runtime.controlprogram.context.SparkExecutionContext.getBroadcastForVariable(SparkExecutionContext.java:536)
at
org.apache.sysml.runtime.instructions.spark.MapmmSPInstruction.processInstruction(MapmmSPInstruction.java:122)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeSingleInstruction(ProgramBlock.java:305)
... 32 more
{code}
was (Author: [email protected]):
Also, just to follow up with that null pointer exception, here's the stacktrace:
{code}
Caused by: org.apache.sysml.runtime.DMLRuntimeException: ERROR: Runtime error
in program block generated from statement block between lines 146 and 156 --
Error evaluating instruction:
SPARK°mapmm°_mVar1312·MATRIX·DOUBLE°W·MATRIX·DOUBLE°_mVar1313·MATRIX·DOUBLE°RIGHT°false°MULTI_BLOCK
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeSingleInstruction(ProgramBlock.java:335)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeInstructions(ProgramBlock.java:224)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.execute(ProgramBlock.java:168)
at
org.apache.sysml.runtime.controlprogram.ForProgramBlock.execute(ForProgramBlock.java:150)
... 29 more
Caused by: java.lang.NullPointerException
at
org.apache.sysml.runtime.controlprogram.caching.CacheBlockFactory.getCode(CacheBlockFactory.java:59)
at
org.apache.sysml.runtime.instructions.spark.data.PartitionedBlock.writeHeaderAndPayload(PartitionedBlock.java:355)
at
org.apache.sysml.runtime.instructions.spark.data.PartitionedBlock.writeExternal(PartitionedBlock.java:332)
at
java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java:1459)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1430)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1178)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:348)
at
org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
at
org.apache.spark.broadcast.TorrentBroadcast$.blockifyObject(TorrentBroadcast.scala:203)
at
org.apache.spark.broadcast.TorrentBroadcast.writeBlocks(TorrentBroadcast.scala:102)
at
org.apache.spark.broadcast.TorrentBroadcast.<init>(TorrentBroadcast.scala:85)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.newBroadcast(TorrentBroadcastFactory.scala:34)
at
org.apache.spark.broadcast.BroadcastManager.newBroadcast(BroadcastManager.scala:63)
at org.apache.spark.SparkContext.broadcast(SparkContext.scala:1326)
at
org.apache.spark.api.java.JavaSparkContext.broadcast(JavaSparkContext.scala:639)
at
org.apache.sysml.runtime.controlprogram.context.SparkExecutionContext.getBroadcastForVariable(SparkExecutionContext.java:536)
at
org.apache.sysml.runtime.instructions.spark.MapmmSPInstruction.processInstruction(MapmmSPInstruction.java:122)
at
org.apache.sysml.runtime.controlprogram.ProgramBlock.executeSingleInstruction(ProgramBlock.java:305)
... 32 more
{code}
> MLContext dataframe-frame conversion with index column & vector column
> ----------------------------------------------------------------------
>
> Key: SYSTEMML-995
> URL: https://issues.apache.org/jira/browse/SYSTEMML-995
> Project: SystemML
> Issue Type: Bug
> Components: APIs
> Affects Versions: SystemML 0.11
> Reporter: Matthias Boehm
> Priority: Blocker
>
> MLContext currently always assumes data frame to frame conversion without
> existing index column. Since the user cannot communicate the existence of
> this column, the data conversion leads to incorrect results as an additional
> column is included in the output frame. We need make the MLContext handling
> of frames consistent with the handling of matrices.
> Additionally, the conversion code in
> {{MLContextConversionUtil.dataFrameToFrameObject()}} does not yet take into
> account frames with vectors, although the recent addition adds this support
> in the underlying {{FrameRDDConverterUtils.java}} class. Therefore, the
> number of columns set when {{mc == null}} is incorrect.
> Thanks [[email protected]] for catching this issue. cc [~acs_s] [~deron]
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