Hi Jim, What do you mean for ID coloring? Could you provide a practical example?
I will update as well the documentation. About the other steps, before I would commit a stable version of what I've done, so you can provide some feedback on that. Can I commit in the "master" branch, from where I've download the source ? I more thing, how do you report error messages in Jalview? do you a particular method? syso.println ? Cheers, Paolo On Apr 7, 2012, at 9:46 AM, Jim Procter wrote: > Hi Paolo. > > On Thu Apr 5 23:54:32 2012, Paolo Di Tommaso wrote: > >> We got it! Here it is a screen shot rendering the T-Coffee score color >> scheme. >> >> http://dl.dropbox.com/u/376524/jalview-tcoffee-scores.png > great ! So the only thing left is the ID colouring ? I've taken a > look and added another task : http://issues.jalview.org/browse/JAL-1065 > > There will be a few other things to think about. Documentation is one, > since you've modified the GUI (these are done via JavaHelp pages in > help/html) and added a new applet parameter (which is documented in > examples/appletParameters.html). The steps after that would be to > provide a means for the user to load their own T-Coffee scores onto an > alignment in the jalview desktop or applet, and ensuring the t-coffee > colourscheme and scores can be saved and loaded again via the Jalview > project (much trickier, so maybe not for this Easter - unless you're up > for it!). > > Jim. _______________________________________________ Jalview-dev mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
