Hi, I've seen the comments but I'm afraid my doubts is much more basic. I don't know what do the following lines mean: 1 gatcctccat atacaacggt atctccacct caggtttaga tcaacaac ggaaccattg 61 ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct 121 ctgcatctga agccgctgaa gttctactaa gggtggataa catcatccgt gcaagaccaa [...]
What I see here is a number (that I guess related with the number of bases cointained in each line: 60 bases/line) and 6 bases string that I don't know if are sub-sequences o if they form part of the same sequence. I've taken a look at embl_mapping.xml and I think I understand how the information is mapped but I still don't know how this applies to GenBank files as the one I'm attaching. BTW, do you want me to incluide these comments on the issue or do you prefer to use the list for discussion? Cheers, David 2013/12/16 Jim Procter <[email protected]> > Thanks David - see the issue for my comments. > > Jim. > > On 14/12/2013 09:48, David Roldán Martínez wrote: > > Hi all, > > I've just finished at GenBankParser > (JAL-1260<http://issues.jalview.org/browse/JAL-1260>), > though I need help to map the parsed info into Jalview datamodel. Can > anybody point me to documentation? > > Thanks so much! > > Cheers, > David > > > _______________________________________________ > Jalview-dev mailing > [email protected]http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev > > > > _______________________________________________ > Jalview-dev mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev > >
genbank_sample.gb
Description: Binary data
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