Hi.
On 03/03/2015 11:34, Mungo Carstairs (Staff) wrote:
I drilled down into the Group by Tree function to see why it seems slow.
Yes. Conservation is manually calculated - without much regard to
colourschemes. It's an ugly inefficiency that was to be addressed in a
future issue related to:
http://issues.jalview.org/browse/JAL-961
I've added the following discussion to a new issue:
http://issues.jalview.org/browse/JAL-1680
Any decision as to whether group conservations are needed needs to know
about:
* state of group consensus/conservation autoannotation display
* apply to all groups checkbox
* current global colourscheme
If conservation is needed, then it has to be done before the groups are
created *or* a visual delay is shown after the groups are created whilst
an alignment calculation worker does it's thing.
Jim.
--
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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, College of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
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