Mostly for Mungo: I just ran across another example for JAL-845: http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001994 (about nucleotide drift in protein families) The corrigenda has the note on where to find the ancestral sequences.
A followup example is here (data may be not so easily accessible): http://www.nature.com/nature/journal/v512/n7513/full/nature13410.html Also - the package I was thinking of that we should look at about propagating nucleotide consensus to protein (JAL-1681) is MACSE.. but I looked at the paper, and it doesn't actually do what we are thinking of doing :) j. -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, College of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk The University of Dundee is registered Scottish charity: No.SC015096 _______________________________________________ Jalview-dev mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-dev
