OK. This could go on the applet java help page (guess we need a separate section for that now ?)
Jim. Sent from my Cyanogen phone On Jul 3, 2017 8:21 AM, "Mungo Carstairs (Staff)" <[email protected]> wrote: FYI - see below about Java / Safari / latest OS/X ________________________________ From: [email protected] <[email protected]> Sent: 01 July 2017 13:15 To: [email protected] Subject: Jmol-users Digest, Vol 134, Issue 1 Send Jmol-users mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit https://lists.sourceforge.net/lists/listinfo/jmol-users or, via email, send a message with subject or body 'help' to [email protected] You can reach the person managing the list at [email protected] When replying, please edit your Subject line so it is more specific than "Re: Contents of Jmol-users digest..." Today's Topics: 1. Java in macOS High Sierra ... is still available. (Rzepa, Henry S) 2. Re: SMARTS question (Robert Hanson) ---------------------------------------------------------------------- Message: 1 Date: Fri, 30 Jun 2017 12:30:06 +0000 From: "Rzepa, Henry S" <[email protected]> To: "<[email protected]>" <[email protected]> Cc: "Rzepa, Henry S" <[email protected]> Subject: [Jmol-users] Java in macOS High Sierra ... is still available. Message-ID: <[email protected]> Content-Type: text/plain; charset="utf-8" The public beta release allows testing of Java in this the latest version, presumed supported for a few years at least. The Safari in this version is the same as the Safari Technology Preview.app which is available separately. The relevant controls have moved to preferences/websites, where Java appears in the new plugins section. Java is off by default and has to be switched on. Any open website must then be selected to run with ?Run in safe mode? deselected (it is on by default). Once these are done, Jmol is again available, and read/write from a local file system is again enabled. Of course Apple may decide to disable these (hidden) features are any stage, but at least they have made their way to their latest OS (with the caveat that this is still beta). -------------- next part -------------- A non-text attachment was scrubbed... Name: smime.p7s Type: application/pkcs7-signature Size: 2682 bytes Desc: not available ------------------------------ Message: 2 Date: Fri, 30 Jun 2017 14:32:44 -0500 From: Robert Hanson <[email protected]> To: "[email protected]" <[email protected]> Subject: Re: [Jmol-users] SMARTS question Message-ID: <CAF_YUvUdXMk9k3RWbc+2Rskp5D=+4ch6b0o6jv+8iiuetme...@mail.gmail.com> Content-Type: text/plain; charset="utf-8" make sure you have loaded the file with set pdbAddHydrogens SMARTS is really not designed to work with models that do not indicate bonding. You can also use Jmol BioSMARTS and target the sequences directly. On Thu, Jun 29, 2017 at 12:28 PM, Eric Martz <[email protected]> wrote: > This selects the aromatic ring carbons of Phe and Tyr: > > rings6 = {*}.find("SMARTS","c1ccccc1", true) > > It does not select the 6-atom ring of Trp. > > This selects the ring of His: > > ringsh = {*}.find("SMARTS","c1cncn1", true) > > How do I select the 5 and 6 atom rings of Trp? > > Thanks, Eric > > > ------------------------------------------------------------ > ------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -------------- next part -------------- An HTML attachment was scrubbed... ------------------------------ ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot ------------------------------ Subject: Digest Footer _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------ End of Jmol-users Digest, Vol 134, Issue 1 ****************************************** The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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