HI Michael, I'm not sure why you are getting
http://www.dasregistry.org/das1/sources//sources it should be http://www.dasregistry.org/das/ You can change this under View->Feature Settings, then hit the DAS Settings tab and change the DAS registry URL. I hope this helps. Geoff. On 20/12/2013 19:05, Michael Wilson wrote: Hi Geoff, Many thanks for your reply! Database fetchers do not initialize it seems. CHEERS! Michael Jalview Desktop 2.8 Build Date: 12 November 2012 Java version: 1.6.0_65 x86_64 Mac OS X 10.6.8 WARN - Exception when discovering One Way services: WARN - Exception when discovering One Way services: INFO - Initialising googletracker for usage stats. INFO - Constructing news reader. INFO - Completed construction of reader. WARN - GET request for "http://www.dasregistry.org/das1/sources//sources"; resulted in 404 (Not Found); invoking error handler INFO - Saved last read date as Dec 4, 2013 12:00:00 PM INFO - Saved last read date as Dec 4, 2013 12:00:00 PM INFO - Saved last read date as Dec 4, 2013 12:00:00 PM Exception in thread "AWT-EventQueue-0" java.lang.StringIndexOutOfBoundsException: String index out of range: -1 at java.lang.String.substring(String.java:1937) at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.addLocalDasSources(DasSourceRegistry.java:196) at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.appendLocalSources(DasSourceRegistry.java:206) at jalview.ws.dbsources.das.datamodel.DasSourceRegistry.getSources(DasSourceRegistry.java:168) at jalview.gui.DasSourceBrowser.<init>(DasSourceBrowser.java:103) at jalview.gui.DasSourceBrowser.<init>(DasSourceBrowser.java:115) at jalview.gui.Preferences.<init>(Preferences.java:110) at jalview.gui.Desktop.preferences_actionPerformed(Desktop.java:1356) at jalview.jbgui.GDesktop$7.actionPerformed(GDesktop.java:198) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242) at javax.swing.AbstractButton.doClick(AbstractButton.java:389) at com.apple.laf.ScreenMenuItem.actionPerformed(ScreenMenuItem.java:95) at java.awt.MenuItem.processActionEvent(MenuItem.java:650) at java.awt.MenuItem.processEvent(MenuItem.java:609) at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:343) at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:331) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:720) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:676) at java.awt.EventQueue$2.run(EventQueue.java:674) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:97) at java.awt.EventQueue$3.run(EventQueue.java:690) at java.awt.EventQueue$3.run(EventQueue.java:688) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.awt.EventQueue.dispatchEvent(EventQueue.java:687) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) The Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT Registered Charity No. 1053902. The information transmitted in this email is directed only to the addressee. If you received this in error, please contact the sender and delete this email from your system. The contents of this e-mail are the views of the sender and do not necessarily represent the views of the Babraham Institute. Full conditions at: www.babraham.ac.uk<http://www.babraham.ac.uk/terms> -- Geoff Barton Professor of Bioinformatics Head of Division of Computational Biology College of Life Sciences University of Dundee, Scotland, UK. [email protected]<mailto:[email protected]> Tel:+44 1382 385860 www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> The University of Dundee is registered Scottish charity: No.SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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